Click here to switch to the map view.

The map label for this gene is abgR [C]

Identifier: 71909932

GI number: 71909932

Start: 128952

End: 129371

Strand: Reverse

Name: abgR [C]

Synonym: M5005_Spy_0118

Alternate gene names: 71909932

Gene position: 129371-128952 (Counterclockwise)

Preceding gene: 71909936

Following gene: 71909931

Centisome position: 7.04

GC content: 36.9

Gene sequence:

>420_bases
ATGAATATCTCAAGCTTGGCTTATTTTATTGAGATTGTTAATTGTGACTTTAACTTAACCAAAGCAGCCCAAAAAAGTCA
TATTTCGCAACCCGCCCTTAGTAGTTATATCAAGACTATCGAAAAAGAAGAAGGAGTCGTTTTATTCCAGCGTCAAAAAG
GGCGTCTAGTTGGACTAACTTCAGTCGGCGAACGCTTTTTTGAAAATGCTAAGGTGGTTATCGCATCACATGAGCAATTA
ATGGCTGATTTGCGGAGTGAATCCAAAAAATACAAAGGAGAAATTTCAATCGGTATTCCTCAACTCATCTCTGGCATTGT
TTTTTCTGAGCTCATTCCAAAACTCATCGAAGAAAATCCCGAAGTTAAATTTCATATTGTAGAAACGGGTGCTTATGAAC
TGCAAAAAAACTGTTTCTAA

Upstream 100 bases:

>100_bases
TATTGAAACGCTTACATTTTTATTATATAATGTGAACTATAATAAACAAATATCGTTTTTTTATATATGCTATAACTAAA
CGTTATCGAAAGAGGAAAAT

Downstream 100 bases:

>100_bases
AAGAAGTCGATTTTGCGATTTTATTAACACCCACTACACTAGATGCTACTATTGCTGATATCGACATTCTCCTAAGAGAT
CAACTCTGCCTTTATATGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQL
MADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKNCF

Sequences:

>Translated_139_residues
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQL
MADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKNCF
>Mature_139_residues
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLTSVGERFFENAKVVIASHEQL
MADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENPEVKFHIVETGAYELQKNCF

Specific function: Could Be The Regulator Of The Abg Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787601, Length=131, Percent_Identity=30.5343511450382, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 15636; Mature: 15636

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLT
CCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEHH
SVGERFFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENP
HHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCC
EVKFHIVETGAYELQKNCF
CEEEEEEECCHHHHHCCCC
>Mature Secondary Structure
MNISSLAYFIEIVNCDFNLTKAAQKSHISQPALSSYIKTIEKEEGVVLFQRQKGRLVGLT
CCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEHH
SVGERFFENAKVVIASHEQLMADLRSESKKYKGEISIGIPQLISGIVFSELIPKLIEENP
HHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHCCCC
EVKFHIVETGAYELQKNCF
CEEEEEEECCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]