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The map label for this gene is dapB

Identifier: 71891908

GI number: 71891908

Start: 150726

End: 151574

Strand: Direct

Name: dapB

Synonym: BPEN_125

Alternate gene names: 71891908

Gene position: 150726-151574 (Clockwise)

Preceding gene: 71891907

Following gene: 71891909

Centisome position: 19.04

GC content: 30.98

Gene sequence:

>849_bases
ATGAGTGATACACCTCTCCGTATTGCCGTTACGGGAGTAACTGGTCGCATGGGAAAAGAAATAGTAACGTGTATTGTTAA
AGAAGAAAAACAATTTAGTCAAGAAATTGTTTTAGGAGCTGCTATAACACGTTTAAATACTAACATTTGTGGAATGGATG
CTGGAATATTAATAAACACTGATGCTTTAGGTATAGAAATTACTGATAATTTGGAATCAATTAAAGATAATTTTGATGTT
TTGGTTGATTTCACTGCCCCTGATATATCTATAGAATATTTAAAATTTTGTGTTAATAATAATAAAAATATAGTTATTGG
TACTACTGGATTTAATCAGATACATAAGAATATTATTCTAAATGCGTCTCATAAAATAGGAATTGTTTTTTCCTCCAATT
TTAGTATAGGTGTAGCGTTAATATCTAAATTATTGCATAAGATTACACAAGTTATAGGTAATACTTCAGATATCAGTATT
ATTGAAACTCATCATAACAGGAAACGTGATATACCGTCTGGAACTTCTTTAACAATGCAAAATATTATTGTAAATGCATT
GCGATCTATTCATTCTAATAGAATTATAGATTCTAATCTTGATTCTACAACGTATTCACCAGCGTCTTCTTATAAAGATA
TATTAATTCATTCGATACGTGCTGGAGATGTCGTTGGAGAACATACTGTTTTATTTGCAGGACCAGGAGAACGTTTAGAA
ATCACGCATAAAGCATCGGATCGTTTAATATTTGCTCATGGGGCATTACGTGCCGCTTTTTGGGTAGGGCGCGATAAAAT
AGGATTATTTGATATAAGCGATATTTTAGAAATGGATACATTATTATGA

Upstream 100 bases:

>100_bases
CTTATTATACTTTATTGTACTTAGTATTATATAGGAACAAATTAGAGTCATAAATTTTTTGTATGTAAAGAATAAACATT
ATTAATAAGGTTATAAAATT

Downstream 100 bases:

>100_bases
TAGCTAAATGCAAGTAAATAATTATATAGTTATATAATCATATATATGATATATAATTTATGTTATTTAAAGAATTTTGA
GACTAATAATAAATAAAACA

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSDTPLRIAVTGVTGRMGKEIVTCIVKEEKQFSQEIVLGAAITRLNTNICGMDAGILINTDALGIEITDNLESIKDNFDV
LVDFTAPDISIEYLKFCVNNNKNIVIGTTGFNQIHKNIILNASHKIGIVFSSNFSIGVALISKLLHKITQVIGNTSDISI
IETHHNRKRDIPSGTSLTMQNIIVNALRSIHSNRIIDSNLDSTTYSPASSYKDILIHSIRAGDVVGEHTVLFAGPGERLE
ITHKASDRLIFAHGALRAAFWVGRDKIGLFDISDILEMDTLL

Sequences:

>Translated_282_residues
MSDTPLRIAVTGVTGRMGKEIVTCIVKEEKQFSQEIVLGAAITRLNTNICGMDAGILINTDALGIEITDNLESIKDNFDV
LVDFTAPDISIEYLKFCVNNNKNIVIGTTGFNQIHKNIILNASHKIGIVFSSNFSIGVALISKLLHKITQVIGNTSDISI
IETHHNRKRDIPSGTSLTMQNIIVNALRSIHSNRIIDSNLDSTTYSPASSYKDILIHSIRAGDVVGEHTVLFAGPGERLE
ITHKASDRLIFAHGALRAAFWVGRDKIGLFDISDILEMDTLL
>Mature_281_residues
SDTPLRIAVTGVTGRMGKEIVTCIVKEEKQFSQEIVLGAAITRLNTNICGMDAGILINTDALGIEITDNLESIKDNFDVL
VDFTAPDISIEYLKFCVNNNKNIVIGTTGFNQIHKNIILNASHKIGIVFSSNFSIGVALISKLLHKITQVIGNTSDISII
ETHHNRKRDIPSGTSLTMQNIIVNALRSIHSNRIIDSNLDSTTYSPASSYKDILIHSIRAGDVVGEHTVLFAGPGERLEI
THKASDRLIFAHGALRAAFWVGRDKIGLFDISDILEMDTLL

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family

Homologues:

Organism=Escherichia coli, GI1786214, Length=287, Percent_Identity=42.1602787456446, Blast_Score=227, Evalue=5e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPB_BLOPB (Q493S0)

Other databases:

- EMBL:   CP000016
- RefSeq:   YP_277638.1
- ProteinModelPortal:   Q493S0
- SMR:   Q493S0
- STRING:   Q493S0
- GeneID:   3563160
- GenomeReviews:   CP000016_GR
- KEGG:   bpn:BPEN_125
- eggNOG:   COG0289
- HOGENOM:   HBG594002
- OMA:   GRMGKTL
- ProtClustDB:   PRK00048
- BioCyc:   CBLO291272:BPEN_125-MONOMER
- GO:   GO:0005737
- GO:   GO:0005488
- HAMAP:   MF_00102
- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR011770
- InterPro:   IPR016040
- Gene3D:   G3DSA:3.40.50.720
- PANTHER:   PTHR20836
- TIGRFAMs:   TIGR00036

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N

EC number: =1.3.1.26

Molecular weight: Translated: 30865; Mature: 30734

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTPLRIAVTGVTGRMGKEIVTCIVKEEKQFSQEIVLGAAITRLNTNICGMDAGILINT
CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC
DALGIEITDNLESIKDNFDVLVDFTAPDISIEYLKFCVNNNKNIVIGTTGFNQIHKNIIL
CCEEEEECCCHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHEEE
NASHKIGIVFSSNFSIGVALISKLLHKITQVIGNTSDISIIETHHNRKRDIPSGTSLTMQ
ECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHH
NIIVNALRSIHSNRIIDSNLDSTTYSPASSYKDILIHSIRAGDVVGEHTVLFAGPGERLE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCEECCCEEEEECCCCEEE
ITHKASDRLIFAHGALRAAFWVGRDKIGLFDISDILEMDTLL
EEECCCCCEEEECCHHEEHEEECCCCCEEEEHHHHHHHHHCC
>Mature Secondary Structure 
SDTPLRIAVTGVTGRMGKEIVTCIVKEEKQFSQEIVLGAAITRLNTNICGMDAGILINT
CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEC
DALGIEITDNLESIKDNFDVLVDFTAPDISIEYLKFCVNNNKNIVIGTTGFNQIHKNIIL
CCEEEEECCCHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHEEE
NASHKIGIVFSSNFSIGVALISKLLHKITQVIGNTSDISIIETHHNRKRDIPSGTSLTMQ
ECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHH
NIIVNALRSIHSNRIIDSNLDSTTYSPASSYKDILIHSIRAGDVVGEHTVLFAGPGERLE
HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCEECCCEEEEECCCCEEE
ITHKASDRLIFAHGALRAAFWVGRDKIGLFDISDILEMDTLL
EEECCCCCEEEECCHHEEHEEECCCCCEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA