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The map label for this gene is yrbK [H]

Identifier: 71891836

GI number: 71891836

Start: 53764

End: 54381

Strand: Reverse

Name: yrbK [H]

Synonym: BPEN_045

Alternate gene names: 71891836

Gene position: 54381-53764 (Counterclockwise)

Preceding gene: 71891839

Following gene: 71891835

Centisome position: 6.87

GC content: 26.38

Gene sequence:

>618_bases
ATGAGATCCCACATAATGTTTTATATTTCAAAATCACTGAAAAAAAATAAAAAATACACTTTTATTTCAATTTTATTCGT
ATTGATAATAATCTTGCTATCTTTTATTATAAAAAAATCATTAATTATGTTTAATGCATCATTACACCCATTAACTCGGA
ATGATATATGCACTCATCAAGGCACCGATGTAACGATTAACGTATATAGTAAAACAGGACAACTGAAATTTAAATTGACA
GCGCACCGCATTCAACATTTTTCAAATCAAAGAATTACTTTGTTTACATGTCCTAGCATTATAGCTTTTGATGACAAAAA
TATCCCAACATGGAAAATTACAGCAAATCAAGCTAAACTAAGTTACAAAACAACACTACACTTATACGGATATGTATATA
TCAATAATTTAATACATAATAGATACTTTCAATCCATTATTACAAATCAAGCGATAATTAACTTAATAACTCAAGATATT
ATTTCAAACAAAAAAGTAATTATACATGGTCATTATTTTTATTCTATTGGGATGAAAATACATGCCAATTTACATACACA
AACGGCAAAATTAATTGATAACGTACAAACTTGTTATGAAATCCAACGCATATGGTAA

Upstream 100 bases:

>100_bases
AAAACCAACAATCGTAACAATAATATTAAATCATAACCATCTCTCCAAGAATATCTTTTGTCGTTTAAAAATAAAAAATA
TTAAATTACAATCATTAAAT

Downstream 100 bases:

>100_bases
ATACAAAATAATACTTACTTATATCAATATACTTTTAGCGTTTACATATTCTCATGCTTTAGCATACAAAAAATCACAAA
TACTTCAAATATATTCTGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MRSHIMFYISKSLKKNKKYTFISILFVLIIILLSFIIKKSLIMFNASLHPLTRNDICTHQGTDVTINVYSKTGQLKFKLT
AHRIQHFSNQRITLFTCPSIIAFDDKNIPTWKITANQAKLSYKTTLHLYGYVYINNLIHNRYFQSIITNQAIINLITQDI
ISNKKVIIHGHYFYSIGMKIHANLHTQTAKLIDNVQTCYEIQRIW

Sequences:

>Translated_205_residues
MRSHIMFYISKSLKKNKKYTFISILFVLIIILLSFIIKKSLIMFNASLHPLTRNDICTHQGTDVTINVYSKTGQLKFKLT
AHRIQHFSNQRITLFTCPSIIAFDDKNIPTWKITANQAKLSYKTTLHLYGYVYINNLIHNRYFQSIITNQAIINLITQDI
ISNKKVIIHGHYFYSIGMKIHANLHTQTAKLIDNVQTCYEIQRIW
>Mature_205_residues
MRSHIMFYISKSLKKNKKYTFISILFVLIIILLSFIIKKSLIMFNASLHPLTRNDICTHQGTDVTINVYSKTGQLKFKLT
AHRIQHFSNQRITLFTCPSIIAFDDKNIPTWKITANQAKLSYKTTLHLYGYVYINNLIHNRYFQSIITNQAIINLITQDI
ISNKKVIIHGHYFYSIGMKIHANLHTQTAKLIDNVQTCYEIQRIW

Specific function: Required for the translocation of lipopolysaccharide (LPS) from the inner membrane to the outer membrane [H]

COG id: COG3117

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the lptC family [H]

Homologues:

Organism=Escherichia coli, GI1789591, Length=179, Percent_Identity=34.0782122905028, Blast_Score=124, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010664 [H]

Pfam domain/function: PF06835 DUF1239 [H]

EC number: NA

Molecular weight: Translated: 23996; Mature: 23996

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSHIMFYISKSLKKNKKYTFISILFVLIIILLSFIIKKSLIMFNASLHPLTRNDICTHQ
CCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
GTDVTINVYSKTGQLKFKLTAHRIQHFSNQRITLFTCPSIIAFDDKNIPTWKITANQAKL
CCEEEEEEEECCCEEEEEEEHHHHHHCCCCEEEEEECCCEEEECCCCCCEEEEECCCEEE
SYKTTLHLYGYVYINNLIHNRYFQSIITNQAIINLITQDIISNKKVIIHGHYFYSIGMKI
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEE
HANLHTQTAKLIDNVQTCYEIQRIW
EECCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRSHIMFYISKSLKKNKKYTFISILFVLIIILLSFIIKKSLIMFNASLHPLTRNDICTHQ
CCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCC
GTDVTINVYSKTGQLKFKLTAHRIQHFSNQRITLFTCPSIIAFDDKNIPTWKITANQAKL
CCEEEEEEEECCCEEEEEEEHHHHHHCCCCEEEEEECCCEEEECCCCCCEEEEECCCEEE
SYKTTLHLYGYVYINNLIHNRYFQSIITNQAIINLITQDIISNKKVIIHGHYFYSIGMKI
EEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEEE
HANLHTQTAKLIDNVQTCYEIQRIW
EECCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]