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The map label for this gene is ccmF [H]

Identifier: 66768214

GI number: 66768214

Start: 2289267

End: 2291204

Strand: Reverse

Name: ccmF [H]

Synonym: XC_1893

Alternate gene names: 66768214

Gene position: 2291204-2289267 (Counterclockwise)

Preceding gene: 66768215

Following gene: 66768213

Centisome position: 44.5

GC content: 67.34

Gene sequence:

>1938_bases
ATGCTGCCTGAACTCGGTACCTTCCTGCTGGTGCTGGCGCTGCTGGTGGCGCTGGTGCAGGCCGTCGTGCCGCTGGCCGG
TGCGCAGCGCGGGCGCAGTGCCTGGATGGCGGTTGCCCGCCCCGCCGCATTGGTGCAACTGGCACTGATCGCTGCGGCAT
TCGCGGTGTTGACGCACGCTTTCCTGGTGCAGGATTTTTCGGTGCGATACGTGGCCGAGAACTCCAACTCGCTGCTGCCG
TTGATCTATCGCTATTCGGCGGTCTGGGGCGCACACGAAGGCTCGTTGCTGCTATGGACGCTGGTGCTGGCGCTATGGAC
GGGCGCGGTGGCGATCTGGTCGCGGCAGTTGCCCGCCCAGGTGATCGCACGCGTGCTGGGCGTGATGGCGCTGGTGAGCA
TCGGCTTCCTGGCGTTCCTGTTGTTCACCTCCAATCCGTTCGCGCGGTTGATGCCGGTGCCGCTGGAAGGCGCCGACCTC
AATCCGCTGCTGCAGGACCCGGGCCTGATCATCCATCCGCCGATGCTTTATTGCGGGTATGTGGGCTTTGCGGTGCCGTT
CGCGTTCGCCATTGCCGCGCTGCTGGAAGGCCGCATGGACGCACGCTGGCTGCGCTGGACGCGGCCATGGACCAACATTG
CCTGGTCGATGCTTACCGTAGGCATCGCGCTGGGCAGCTGGTGGGCGTATTACGAACTGGGCTGGGGTGGCTGGTGGTTC
TGGGACCCGGTGGAAAATGCCAGCTTCATGCCCTGGCTGGTCGGAACTGCGCTGCTGCACTCGCAGGCGGTCACCGGAAA
ACGCGGCAGCTTCGCCAGCTGGACGCTGCTGCTGGCAATCGCCGCCTTCGCGCTGTCGCTGCTGGGGACCTTCCTGGTGC
GTTCGGGTGTGCTGACCAGCGTGCATTCGTTTGCGGCCGATCCCTCGCGCGGCGTGTTCATCCTGGTGTTCCTGCTGAGC
GTGGTCGGCGGCTCGTTGCTGCTGTATGTGCTGCGCGCGCCGCGGTTGTCGCAGGGCGATGACCCGCGCCGGGCCTTTGC
CGGCAGCTCGCGCGAAACGCTGTTGCTGTTGAACAACCTGCTGCTGGCCTGCGCCTGCGCGATGGTGCTGCTGGGCACGC
TGTACCCGCTGCTGGCCGATGCGCTGGGCCTGGGCAAACTGTCGGTTGGCCCGCCCTACTTCGGCACGCTGTTCCTGGTG
CTGATGGCGCCGCTGGTGGCGCTGCTGCCGTTCGGGCCGCTGACCCGCTGGCAGCGCGACCAACCCTCGCGTCCGCTGGC
GATGCTCGCGCCCTGGGCCGCGCTGGCCGTCGTGCTCGGGGTGCTGGCCTGGTTCGCCGCACCGCAGGGCCAGCTGAAAG
CGGCACTCGGCGTGGCGGGAGCGGCCTGGGTGGTGCTGGGCACGCTGCGTTTTTTGTGGACGCGCCGCGCTGCCAAGGGG
CGCAAGTTCACCGCCGAGATGCTCGGCATGGCGCTGGCGCATACGGGCGTTGCTGTGTTCCTGGCCGGTGCCTTGCTGGT
GGAATCGCTCAGCCTGCAGCGCGAAGTCGCGCTGGCACCCGGCCAGCAGATGGAGATCGGCAGCTACGCACTGCATTTCG
ACGGGCTGAAAGAAGTGCGCGGGCCGAACTACGTCTCCGACCGCGCCACCTTGCAGGTGTTCAAGGACGACGCGGCAGTG
GGCACGCTGCATGCCGAAAAACGCCGTTACGCCAGTGGCGGCCAAACCCTGACCGAGGCGGCGATCCGCCCGGGTCCGTT
TGGCGATCTTTACGTCGCCCTGGGCGAACCGCTGGGCAATCAGGCCTGGGCGGTGCGTGTGCATCTCAAACCGTTTGTCC
GCTGGATCTGGCTGGGAGCGCTGCTGATGGCGCTCGGCGGCCTGGTCACCGCGGCCGACCGGCGTTTCCGTCGTTCTCCG
GAGTCCCTAAATGTCTGA

Upstream 100 bases:

>100_bases
GACGCACAGATCGACGGCACCGCGACTGACGGCCATACGCTGCCACGCAGGCGCGCGGTATCGCCGGCCATCCGACGTTG
TAGGAATGACAGGCAGGCCG

Downstream 100 bases:

>100_bases
CCCTCGCACCTCCCGCCTGCCCACCGCCGTGCTTGTGGGAGCGGGCATCCTGCTGCTCGCGCTGGCGGCGTTGCTGGTCT
ACGCCGTGGTGCGTTCGGGC

Product: c-type cytochrome biogenesis membrane protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 645; Mature: 645

Protein sequence:

>645_residues
MLPELGTFLLVLALLVALVQAVVPLAGAQRGRSAWMAVARPAALVQLALIAAAFAVLTHAFLVQDFSVRYVAENSNSLLP
LIYRYSAVWGAHEGSLLLWTLVLALWTGAVAIWSRQLPAQVIARVLGVMALVSIGFLAFLLFTSNPFARLMPVPLEGADL
NPLLQDPGLIIHPPMLYCGYVGFAVPFAFAIAALLEGRMDARWLRWTRPWTNIAWSMLTVGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALLHSQAVTGKRGSFASWTLLLAIAAFALSLLGTFLVRSGVLTSVHSFAADPSRGVFILVFLLS
VVGGSLLLYVLRAPRLSQGDDPRRAFAGSSRETLLLLNNLLLACACAMVLLGTLYPLLADALGLGKLSVGPPYFGTLFLV
LMAPLVALLPFGPLTRWQRDQPSRPLAMLAPWAALAVVLGVLAWFAAPQGQLKAALGVAGAAWVVLGTLRFLWTRRAAKG
RKFTAEMLGMALAHTGVAVFLAGALLVESLSLQREVALAPGQQMEIGSYALHFDGLKEVRGPNYVSDRATLQVFKDDAAV
GTLHAEKRRYASGGQTLTEAAIRPGPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWLGALLMALGGLVTAADRRFRRSP
ESLNV

Sequences:

>Translated_645_residues
MLPELGTFLLVLALLVALVQAVVPLAGAQRGRSAWMAVARPAALVQLALIAAAFAVLTHAFLVQDFSVRYVAENSNSLLP
LIYRYSAVWGAHEGSLLLWTLVLALWTGAVAIWSRQLPAQVIARVLGVMALVSIGFLAFLLFTSNPFARLMPVPLEGADL
NPLLQDPGLIIHPPMLYCGYVGFAVPFAFAIAALLEGRMDARWLRWTRPWTNIAWSMLTVGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALLHSQAVTGKRGSFASWTLLLAIAAFALSLLGTFLVRSGVLTSVHSFAADPSRGVFILVFLLS
VVGGSLLLYVLRAPRLSQGDDPRRAFAGSSRETLLLLNNLLLACACAMVLLGTLYPLLADALGLGKLSVGPPYFGTLFLV
LMAPLVALLPFGPLTRWQRDQPSRPLAMLAPWAALAVVLGVLAWFAAPQGQLKAALGVAGAAWVVLGTLRFLWTRRAAKG
RKFTAEMLGMALAHTGVAVFLAGALLVESLSLQREVALAPGQQMEIGSYALHFDGLKEVRGPNYVSDRATLQVFKDDAAV
GTLHAEKRRYASGGQTLTEAAIRPGPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWLGALLMALGGLVTAADRRFRRSP
ESLNV
>Mature_645_residues
MLPELGTFLLVLALLVALVQAVVPLAGAQRGRSAWMAVARPAALVQLALIAAAFAVLTHAFLVQDFSVRYVAENSNSLLP
LIYRYSAVWGAHEGSLLLWTLVLALWTGAVAIWSRQLPAQVIARVLGVMALVSIGFLAFLLFTSNPFARLMPVPLEGADL
NPLLQDPGLIIHPPMLYCGYVGFAVPFAFAIAALLEGRMDARWLRWTRPWTNIAWSMLTVGIALGSWWAYYELGWGGWWF
WDPVENASFMPWLVGTALLHSQAVTGKRGSFASWTLLLAIAAFALSLLGTFLVRSGVLTSVHSFAADPSRGVFILVFLLS
VVGGSLLLYVLRAPRLSQGDDPRRAFAGSSRETLLLLNNLLLACACAMVLLGTLYPLLADALGLGKLSVGPPYFGTLFLV
LMAPLVALLPFGPLTRWQRDQPSRPLAMLAPWAALAVVLGVLAWFAAPQGQLKAALGVAGAAWVVLGTLRFLWTRRAAKG
RKFTAEMLGMALAHTGVAVFLAGALLVESLSLQREVALAPGQQMEIGSYALHFDGLKEVRGPNYVSDRATLQVFKDDAAV
GTLHAEKRRYASGGQTLTEAAIRPGPFGDLYVALGEPLGNQAWAVRVHLKPFVRWIWLGALLMALGGLVTAADRRFRRSP
ESLNV

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=647, Percent_Identity=53.9412673879444, Blast_Score=619, Evalue=1e-178,
Organism=Escherichia coli, GI1790511, Length=578, Percent_Identity=40.6574394463668, Blast_Score=342, Evalue=5e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 69715; Mature: 69715

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPELGTFLLVLALLVALVQAVVPLAGAQRGRSAWMAVARPAALVQLALIAAAFAVLTHA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLVQDFSVRYVAENSNSLLPLIYRYSAVWGAHEGSLLLWTLVLALWTGAVAIWSRQLPAQ
HHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
VIARVLGVMALVSIGFLAFLLFTSNPFARLMPVPLEGADLNPLLQDPGLIIHPPMLYCGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHCCCCCEEECHHHHHHH
VGFAVPFAFAIAALLEGRMDARWLRWTRPWTNIAWSMLTVGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENASFMPWLVGTALLHSQAVTGKRGSFASWTLLLAIAAFALSLLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGVFILVFLLSVVGGSLLLYVLRAPRLSQGDDPRRAFAGSSRETLLLLNNL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHH
LLACACAMVLLGTLYPLLADALGLGKLSVGPPYFGTLFLVLMAPLVALLPFGPLTRWQRD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
QPSRPLAMLAPWAALAVVLGVLAWFAAPQGQLKAALGVAGAAWVVLGTLRFLWTRRAAKG
CCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RKFTAEMLGMALAHTGVAVFLAGALLVESLSLQREVALAPGQQMEIGSYALHFDGLKEVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEECCCHHHHC
GPNYVSDRATLQVFKDDAAVGTLHAEKRRYASGGQTLTEAAIRPGPFGDLYVALGEPLGN
CCCCCCCCHHHEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEEECCCCCC
QAWAVRVHLKPFVRWIWLGALLMALGGLVTAADRRFRRSPESLNV
CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLPELGTFLLVLALLVALVQAVVPLAGAQRGRSAWMAVARPAALVQLALIAAAFAVLTHA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FLVQDFSVRYVAENSNSLLPLIYRYSAVWGAHEGSLLLWTLVLALWTGAVAIWSRQLPAQ
HHHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
VIARVLGVMALVSIGFLAFLLFTSNPFARLMPVPLEGADLNPLLQDPGLIIHPPMLYCGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCHHCCCCCEEECHHHHHHH
VGFAVPFAFAIAALLEGRMDARWLRWTRPWTNIAWSMLTVGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENASFMPWLVGTALLHSQAVTGKRGSFASWTLLLAIAAFALSLLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGVFILVFLLSVVGGSLLLYVLRAPRLSQGDDPRRAFAGSSRETLLLLNNL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCHHHHHHHH
LLACACAMVLLGTLYPLLADALGLGKLSVGPPYFGTLFLVLMAPLVALLPFGPLTRWQRD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
QPSRPLAMLAPWAALAVVLGVLAWFAAPQGQLKAALGVAGAAWVVLGTLRFLWTRRAAKG
CCCCCHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RKFTAEMLGMALAHTGVAVFLAGALLVESLSLQREVALAPGQQMEIGSYALHFDGLKEVR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCEEEECCCHHHHC
GPNYVSDRATLQVFKDDAAVGTLHAEKRRYASGGQTLTEAAIRPGPFGDLYVALGEPLGN
CCCCCCCCHHHEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCEEEEECCCCCC
QAWAVRVHLKPFVRWIWLGALLMALGGLVTAADRRFRRSPESLNV
CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA