| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
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The map label for this gene is yhiN [H]
Identifier: 66768146
GI number: 66768146
Start: 2219019
End: 2220200
Strand: Reverse
Name: yhiN [H]
Synonym: XC_1825
Alternate gene names: 66768146
Gene position: 2220200-2219019 (Counterclockwise)
Preceding gene: 66768147
Following gene: 66768145
Centisome position: 43.12
GC content: 67.85
Gene sequence:
>1182_bases ATGAGCACGCGTTGCGATGTGCTGGTCGTCGGCGCCGGCGCTGCCGGGCTGATGAGCGCCTTCACGGCCGGCCGCCGCGG GCGGCAGGTGCTGGTGATCGACCACGCCAACAAGGTGGGCAAGAAGATCCTGATGTCCGGCGGTGGGCGCTGCAACTTCA CCAATACCGGCACCACCCCGGCCAATTTTGTTTCGGCCAACCGGCACTTCTGCAAGTCCGCCCTCGCCCGCTACACCCCG AGTGCGTTCGTGGAACTGGTGGAGCAGCACGGCATCGCCTATCACGAGAAAGAGCTGGGCCAGTTGTTCTGCGATGTGTC GTCCAAGCAGATCGTGCGCATGCTGCTGGACGAATGCGAGGCGGCCGGCGTGCAGATCCGCACCCAATGCGAGGTGCAGG CGGTGCGCCGCGACAGCGACGGCTTCAGCGTGGACACCAGCCAAGGCCGCGTGCAGACGCAGGCGCTGATCGTGGCGACC GGCGGGCTGTCGATTCCTAGCATGGGCGCGAGCGGCTTCGGCTACACGCTGGCCAGGCAATTCGGTCATCAGCTGCTGCC TACCCGCGCCGGGCTGGTGCCGCTCACCCTCAGCGGCAAGCATCAGGAACGCCTGCAGGATCTGTCCGGCCTGGCCGTGC CGGTCGAGGCGCACTGCAATGGCGCCAGTTTTCGCAACTTCATGCTGATCACCCACCGTGGCGTCAGCGGGCCGGCGATC CTGCAGATCTCCTCGTTCTGGCAGCCCGGCGATGATCTGCGCCTGGACCTGCTGCCAGGCCATGACGCCGAGGCCTGGCT GCGCGAACAAAAGCAACTGCGCGGGGCCACCGAGCTGCGCAACGTGCTGGGCGAGGTCCTGCCACGGCGCTTTGCGCAGC GACTGTGCGAGGTGTGGCTGCCAGACAAGCCGGTGCGCCAGCTCGATCCACCCCAGTTGCGCGCGGCCGCCGACCTGCTC GGTGGCTGGCCGCTGGTGGCCAGCGGCACCGAGGGCTATCGCACCGCCGAGGTCACCCTGGGCGGCGTGGACACCGACCA GGTGTCCAGTGCGACGATGGAGTCGCGCCTGGTAGCCGGGCTGTACTTCGTTGGCGAAGTGCTCGACGTCACCGGTTGGC TGGGCGGCTACAACTTCCAATGGGCCTGGGCGTCCGGGCATGCTGCCGGAAGCGTGGCCTAG
Upstream 100 bases:
>100_bases GCATGCGCTTTGACGTAATCATCCAGGACGGCGAAGTGCAGATGCTGGCCGACCAGGGCACCGTCACGCTCACTCCGATC GTGCGACAAGCCCCGGCGGA
Downstream 100 bases:
>100_bases GTCTCACCGTCGCTGCGCGCCCGTCCACATACATGGACGCGCCGAACCCCTTCGTGTATTAAAGCCCGTCTCTAGGGAGC CGCGCATGCAGAAAGGCAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MSTRCDVLVVGAGAAGLMSAFTAGRRGRQVLVIDHANKVGKKILMSGGGRCNFTNTGTTPANFVSANRHFCKSALARYTP SAFVELVEQHGIAYHEKELGQLFCDVSSKQIVRMLLDECEAAGVQIRTQCEVQAVRRDSDGFSVDTSQGRVQTQALIVAT GGLSIPSMGASGFGYTLARQFGHQLLPTRAGLVPLTLSGKHQERLQDLSGLAVPVEAHCNGASFRNFMLITHRGVSGPAI LQISSFWQPGDDLRLDLLPGHDAEAWLREQKQLRGATELRNVLGEVLPRRFAQRLCEVWLPDKPVRQLDPPQLRAAADLL GGWPLVASGTEGYRTAEVTLGGVDTDQVSSATMESRLVAGLYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA
Sequences:
>Translated_393_residues MSTRCDVLVVGAGAAGLMSAFTAGRRGRQVLVIDHANKVGKKILMSGGGRCNFTNTGTTPANFVSANRHFCKSALARYTP SAFVELVEQHGIAYHEKELGQLFCDVSSKQIVRMLLDECEAAGVQIRTQCEVQAVRRDSDGFSVDTSQGRVQTQALIVAT GGLSIPSMGASGFGYTLARQFGHQLLPTRAGLVPLTLSGKHQERLQDLSGLAVPVEAHCNGASFRNFMLITHRGVSGPAI LQISSFWQPGDDLRLDLLPGHDAEAWLREQKQLRGATELRNVLGEVLPRRFAQRLCEVWLPDKPVRQLDPPQLRAAADLL GGWPLVASGTEGYRTAEVTLGGVDTDQVSSATMESRLVAGLYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA >Mature_392_residues STRCDVLVVGAGAAGLMSAFTAGRRGRQVLVIDHANKVGKKILMSGGGRCNFTNTGTTPANFVSANRHFCKSALARYTPS AFVELVEQHGIAYHEKELGQLFCDVSSKQIVRMLLDECEAAGVQIRTQCEVQAVRRDSDGFSVDTSQGRVQTQALIVATG GLSIPSMGASGFGYTLARQFGHQLLPTRAGLVPLTLSGKHQERLQDLSGLAVPVEAHCNGASFRNFMLITHRGVSGPAIL QISSFWQPGDDLRLDLLPGHDAEAWLREQKQLRGATELRNVLGEVLPRRFAQRLCEVWLPDKPVRQLDPPQLRAAADLLG GWPLVASGTEGYRTAEVTLGGVDTDQVSSATMESRLVAGLYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae HI_0933 [H]
Homologues:
Organism=Escherichia coli, GI2367234, Length=368, Percent_Identity=55.7065217391304, Blast_Score=410, Evalue=1e-116,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 - InterPro: IPR023166 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 42300; Mature: 42168
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRCDVLVVGAGAAGLMSAFTAGRRGRQVLVIDHANKVGKKILMSGGGRCNFTNTGTTP CCCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCCC ANFVSANRHFCKSALARYTPSAFVELVEQHGIAYHEKELGQLFCDVSSKQIVRMLLDECE HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH AAGVQIRTQCEVQAVRRDSDGFSVDTSQGRVQTQALIVATGGLSIPSMGASGFGYTLARQ HCCCEEEEHHHHHHHHCCCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHH FGHQLLPTRAGLVPLTLSGKHQERLQDLSGLAVPVEAHCNGASFRNFMLITHRGVSGPAI HHHHHCCCCCCEEEEEECCCHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCEE LQISSFWQPGDDLRLDLLPGHDAEAWLREQKQLRGATELRNVLGEVLPRRFAQRLCEVWL EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC PDKPVRQLDPPQLRAAADLLGGWPLVASGTEGYRTAEVTLGGVDTDQVSSATMESRLVAG CCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC >Mature Secondary Structure STRCDVLVVGAGAAGLMSAFTAGRRGRQVLVIDHANKVGKKILMSGGGRCNFTNTGTTP CCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCCEEECCCCCCCC ANFVSANRHFCKSALARYTPSAFVELVEQHGIAYHEKELGQLFCDVSSKQIVRMLLDECE HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH AAGVQIRTQCEVQAVRRDSDGFSVDTSQGRVQTQALIVATGGLSIPSMGASGFGYTLARQ HCCCEEEEHHHHHHHHCCCCCCEEECCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHH FGHQLLPTRAGLVPLTLSGKHQERLQDLSGLAVPVEAHCNGASFRNFMLITHRGVSGPAI HHHHHCCCCCCEEEEEECCCHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEECCCCCCEE LQISSFWQPGDDLRLDLLPGHDAEAWLREQKQLRGATELRNVLGEVLPRRFAQRLCEVWL EEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCC PDKPVRQLDPPQLRAAADLLGGWPLVASGTEGYRTAEVTLGGVDTDQVSSATMESRLVAG CCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHH LYFVGEVLDVTGWLGGYNFQWAWASGHAAGSVA HHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]