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The map label for this gene is xseB

Identifier: 66767843

GI number: 66767843

Start: 1825967

End: 1826230

Strand: Reverse

Name: xseB

Synonym: XC_1517

Alternate gene names: 66767843

Gene position: 1826230-1825967 (Counterclockwise)

Preceding gene: 66767844

Following gene: 66767842

Centisome position: 35.47

GC content: 63.64

Gene sequence:

>264_bases
ATGGCCAAGAAGTCTTTGAACGAATCCTCCCCCGTCGCCCGCTTCGAACAGTCGCTGGAAGAACTCGAGCAACTGGTGCA
GAAGATGGAAGTGGGCGAGATGAGCCTGGAGCAGTCGCTCACCGCCTACGAGCGCGGCATCGGGCTGTACCGCGATTGCC
AGCAGGCGCTGGAACAGGCGGAATTGCGCGTGCGTCTGGTGACCGACCCCGCACGCCCCGAACAGGCAGAAGCATTCGAG
CCGCCGTCGCTGGATGGCGGCTGA

Upstream 100 bases:

>100_bases
AAGCTGGACCAGTGGTTGCGTGCGCACGCCGCGCGCCTGCAGTGGCGCAGCGCTGCACCCGCGAATTGACCCGCCTGCGC
GCGCGCCGCACACTTTGTCG

Downstream 100 bases:

>100_bases
GTGAGCGCGGCGTTGTTTGAGCGCTGGGTTGCTCGCACCGAACGGCAGCTGGACGCCTGCCTTCCCAGCCCCGCCCTCGC
CCCGCAGCGTCTGCACGCGG

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MAKKSLNESSPVARFEQSLEELEQLVQKMEVGEMSLEQSLTAYERGIGLYRDCQQALEQAELRVRLVTDPARPEQAEAFE
PPSLDGG

Sequences:

>Translated_87_residues
MAKKSLNESSPVARFEQSLEELEQLVQKMEVGEMSLEQSLTAYERGIGLYRDCQQALEQAELRVRLVTDPARPEQAEAFE
PPSLDGG
>Mature_86_residues
AKKSLNESSPVARFEQSLEELEQLVQKMEVGEMSLEQSLTAYERGIGLYRDCQQALEQAELRVRLVTDPARPEQAEAFEP
PSLDGG

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_XANC8 (Q4UWI8)

Other databases:

- EMBL:   CP000050
- RefSeq:   YP_242605.1
- ProteinModelPortal:   Q4UWI8
- SMR:   Q4UWI8
- STRING:   Q4UWI8
- GeneID:   3381860
- GenomeReviews:   CP000050_GR
- KEGG:   xcb:XC_1517
- eggNOG:   COG1722
- HOGENOM:   HBG728416
- OMA:   PENASPV
- ProtClustDB:   PRK00977
- BioCyc:   XCAM314565:XC_1517-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235
- TIGRFAMs:   TIGR01280

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9754; Mature: 9623

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKSLNESSPVARFEQSLEELEQLVQKMEVGEMSLEQSLTAYERGIGLYRDCQQALEQA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELRVRLVTDPARPEQAEAFEPPSLDGG
HHHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKKSLNESSPVARFEQSLEELEQLVQKMEVGEMSLEQSLTAYERGIGLYRDCQQALEQA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
ELRVRLVTDPARPEQAEAFEPPSLDGG
HHHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA