Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 66767761

GI number: 66767761

Start: 1733070

End: 1733759

Strand: Direct

Name: ycdC [C]

Synonym: XC_1435

Alternate gene names: 66767761

Gene position: 1733070-1733759 (Clockwise)

Preceding gene: 66767760

Following gene: 66767762

Centisome position: 33.66

GC content: 69.13

Gene sequence:

>690_bases
TTGCCGGCGCCGGGCCGGCGCGTGCCGCATGCCAAGCGTGGCGCGACCCTGGCCGCCGCGCAGCAGTTGTTTACACAGCA
GGGCTTCGAGCGCACCAGCATGGACCGCATCGCCGAAGACGCGGGCGTGTCCAAGGCGACGGTGTATGCGTACTTCGCGT
CCAAGGAGGTGCTGTTCCGCACCACGTTGGAAGCGATGGCGCATGCGGCGTCCAATCGCTGGGATGGTCTGCTGACGTTG
CCCGGGCCGGTGGCGCAACGCTTGGCGGCGGTTGCCAGTGTGCTGCTGCAGGTCTGGACCAATGCGGCGCGGCAGGATGC
CGCCTACGGACTGGTGCGGCCGCCGTCGCTGCCCAGCCAGATCCGCGAAGAAATGTGGACGCTGTGCTTCGAACGCTACG
ACAGCACGATGCGTGCGCTGCTGGCACGCGAAGTGGCGCAGGGCGCCTTGGTCATCGACAACCTGCCCGACGCCTCGGTG
CAGTTCTTCGGGCTGATCACGGCAGTGCCGACCGAGGTGCCAGCGCCTGGCATGCCACCGGATGCAGCCACAGCGCAGCG
CTACATCGATGGCGCGGTGGCAGCGTTCTTGCGCGCGTATCGCCCGGTGCCAGCGGCGCCCGCAGCGACCGGCAGGCGAA
CGCCGCGCGCGCCGGCATCGCGCGCGGAGAGTGACGACGCACATTCATGA

Upstream 100 bases:

>100_bases
GCGATGGGCGGCGGCTGGCTGCAGGCCGATGGGCCGGACGTGGCCGCCGCCGACACGGCGTCGCCCCGTGGCTGATACGG
CCCCGGCGCAAGGCCCGGCC

Downstream 100 bases:

>100_bases
GCATGCGCGCCGTGCGCTGCACTCCGCGCGGTATGCCGGCTGACGTGTGCGCTTGGTGCCGTCCAATCCGCGTGTGCGCT
GGCGAGCAACGCGGTGCCGC

Product: transcriptional regulator

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MPAPGRRVPHAKRGATLAAAQQLFTQQGFERTSMDRIAEDAGVSKATVYAYFASKEVLFRTTLEAMAHAASNRWDGLLTL
PGPVAQRLAAVASVLLQVWTNAARQDAAYGLVRPPSLPSQIREEMWTLCFERYDSTMRALLAREVAQGALVIDNLPDASV
QFFGLITAVPTEVPAPGMPPDAATAQRYIDGAVAAFLRAYRPVPAAPAATGRRTPRAPASRAESDDAHS

Sequences:

>Translated_229_residues
MPAPGRRVPHAKRGATLAAAQQLFTQQGFERTSMDRIAEDAGVSKATVYAYFASKEVLFRTTLEAMAHAASNRWDGLLTL
PGPVAQRLAAVASVLLQVWTNAARQDAAYGLVRPPSLPSQIREEMWTLCFERYDSTMRALLAREVAQGALVIDNLPDASV
QFFGLITAVPTEVPAPGMPPDAATAQRYIDGAVAAFLRAYRPVPAAPAATGRRTPRAPASRAESDDAHS
>Mature_228_residues
PAPGRRVPHAKRGATLAAAQQLFTQQGFERTSMDRIAEDAGVSKATVYAYFASKEVLFRTTLEAMAHAASNRWDGLLTLP
GPVAQRLAAVASVLLQVWTNAARQDAAYGLVRPPSLPSQIREEMWTLCFERYDSTMRALLAREVAQGALVIDNLPDASVQ
FFGLITAVPTEVPAPGMPPDAATAQRYIDGAVAAFLRAYRPVPAAPAATGRRTPRAPASRAESDDAHS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24600; Mature: 24469

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPGRRVPHAKRGATLAAAQQLFTQQGFERTSMDRIAEDAGVSKATVYAYFASKEVLFR
CCCCCCCCCCHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHEEHHHCHHHHHH
TTLEAMAHAASNRWDGLLTLPGPVAQRLAAVASVLLQVWTNAARQDAAYGLVRPPSLPSQ
HHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
IREEMWTLCFERYDSTMRALLAREVAQGALVIDNLPDASVQFFGLITAVPTEVPAPGMPP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
DAATAQRYIDGAVAAFLRAYRPVPAAPAATGRRTPRAPASRAESDDAHS
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PAPGRRVPHAKRGATLAAAQQLFTQQGFERTSMDRIAEDAGVSKATVYAYFASKEVLFR
CCCCCCCCCHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHEEHHHCHHHHHH
TTLEAMAHAASNRWDGLLTLPGPVAQRLAAVASVLLQVWTNAARQDAAYGLVRPPSLPSQ
HHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
IREEMWTLCFERYDSTMRALLAREVAQGALVIDNLPDASVQFFGLITAVPTEVPAPGMPP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCCCC
DAATAQRYIDGAVAAFLRAYRPVPAAPAATGRRTPRAPASRAESDDAHS
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA