| Definition | Xanthomonas campestris pv. campestris str. 8004 chromosome, complete genome. |
|---|---|
| Accession | NC_007086 |
| Length | 5,148,708 |
Click here to switch to the map view.
The map label for this gene is yceI [C]
Identifier: 66767586
GI number: 66767586
Start: 1539344
End: 1540021
Strand: Reverse
Name: yceI [C]
Synonym: XC_1259
Alternate gene names: 66767586
Gene position: 1540021-1539344 (Counterclockwise)
Preceding gene: 66767590
Following gene: 66767585
Centisome position: 29.91
GC content: 70.5
Gene sequence:
>678_bases ATGACGCCTCTCGCCCGCCTGCTGGCCTTCCCTGCCCTGGTCCTGACCAGCCTCGCCGCCACCGCCGCGCCGGTGCGCTA CGCGCTGGATCCGGTCCACACCCGGGTGCTGTTCGCGGTGGAACATGCCGGGTTTTCCAAGGCGTTGGGCACCGTGTCCG GCAGCAGCGGCACCCTGGTGTTCGATCCGGACGACTGGGCGGCGGCAACGCTCGAGGTCACCGTGCCGCTGCGCCGCGCG GACCTGGGCGATGCGAAATGGAACGAGGCCACCCTGGCACGCAACCTACTCGACGCCGAGCGCTTTCCTGACGCGCATTT CGTCTCCACCAAGGTCGAGGCCAGCGATGCGACCCACGCCAAGGTCACCGGCAACCTCACCCTGCACGGGGTCACCCGGC CGGTCACGCTGGACGTCACCCTCAACGCGCTCAAGCGGCATCCGTTACCGCCATTCCGCCGCACCGCCGGCTTCTCGGCC ACGGCCACGCTCAGCCGCGCCGCGTTCGGCGTGGATGCCTGGAAGTCGATGATCGGCGACACCGTCGAGCTGCGCATCGA AGCCGAGGCCGTCCGCGAAGGGCGCGCCGACAGCGACGACGATGCCGGCAAGACCACCGAGCCCGCCGCGCCGGAGCAAC CCGCACCAGCGACCACCGATACGGAGAGCGGCCGATGA
Upstream 100 bases:
>100_bases GCATGTGGGCATCCTTTCCACGTCCAGTCCGCATGCTCGCAACGGATCGTTGCGAACGCAAGCCAAGCGCGCGCTGCCGG GATGTGTCTAGAATCCGCCC
Downstream 100 bases:
>100_bases GCCTGAAGAATGTCGAGCGCTGGGGCGGCGTCAGCCAGACCCTGCACTGGTTGATCGCGCTGCTGATCCTGGTGCTGGGC ATCGTGGGCCTGACCATGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 225; Mature: 224
Protein sequence:
>225_residues MTPLARLLAFPALVLTSLAATAAPVRYALDPVHTRVLFAVEHAGFSKALGTVSGSSGTLVFDPDDWAAATLEVTVPLRRA DLGDAKWNEATLARNLLDAERFPDAHFVSTKVEASDATHAKVTGNLTLHGVTRPVTLDVTLNALKRHPLPPFRRTAGFSA TATLSRAAFGVDAWKSMIGDTVELRIEAEAVREGRADSDDDAGKTTEPAAPEQPAPATTDTESGR
Sequences:
>Translated_225_residues MTPLARLLAFPALVLTSLAATAAPVRYALDPVHTRVLFAVEHAGFSKALGTVSGSSGTLVFDPDDWAAATLEVTVPLRRA DLGDAKWNEATLARNLLDAERFPDAHFVSTKVEASDATHAKVTGNLTLHGVTRPVTLDVTLNALKRHPLPPFRRTAGFSA TATLSRAAFGVDAWKSMIGDTVELRIEAEAVREGRADSDDDAGKTTEPAAPEQPAPATTDTESGR >Mature_224_residues TPLARLLAFPALVLTSLAATAAPVRYALDPVHTRVLFAVEHAGFSKALGTVSGSSGTLVFDPDDWAAATLEVTVPLRRAD LGDAKWNEATLARNLLDAERFPDAHFVSTKVEASDATHAKVTGNLTLHGVTRPVTLDVTLNALKRHPLPPFRRTAGFSAT ATLSRAAFGVDAWKSMIGDTVELRIEAEAVREGRADSDDDAGKTTEPAAPEQPAPATTDTESGR
Specific function: Unknown
COG id: COG2353
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0312 family. Type 1 subfamily [H]
Homologues:
Organism=Escherichia coli, GI1787295, Length=186, Percent_Identity=30.6451612903226, Blast_Score=84, Evalue=8e-18,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007372 [H]
Pfam domain/function: PF04264 YceI [H]
EC number: NA
Molecular weight: Translated: 23835; Mature: 23704
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.4 %Met (Mature Protein) 0.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPLARLLAFPALVLTSLAATAAPVRYALDPVHTRVLFAVEHAGFSKALGTVSGSSGTLV CCHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHEEEEEEHHCCHHHHHHCCCCCCCEEE FDPDDWAAATLEVTVPLRRADLGDAKWNEATLARNLLDAERFPDAHFVSTKVEASDATHA ECCCCCCEEEEEEEEEHEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEE KVTGNLTLHGVTRPVTLDVTLNALKRHPLPPFRRTAGFSATATLSRAAFGVDAWKSMIGD EEECCEEEEECCCCEEEEEEHHHHHCCCCCCHHHHCCCCHHHHHHHHHHCHHHHHHHCCC TVELRIEAEAVREGRADSDDDAGKTTEPAAPEQPAPATTDTESGR EEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TPLARLLAFPALVLTSLAATAAPVRYALDPVHTRVLFAVEHAGFSKALGTVSGSSGTLV CHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHEEEEEEHHCCHHHHHHCCCCCCCEEE FDPDDWAAATLEVTVPLRRADLGDAKWNEATLARNLLDAERFPDAHFVSTKVEASDATHA ECCCCCCEEEEEEEEEHEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEE KVTGNLTLHGVTRPVTLDVTLNALKRHPLPPFRRTAGFSATATLSRAAFGVDAWKSMIGD EEECCEEEEECCCCEEEEEEHHHHHCCCCCCHHHHCCCCHHHHHHHHHHCHHHHHHHCCC TVELRIEAEAVREGRADSDDDAGKTTEPAAPEQPAPATTDTESGR EEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA