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The map label for this gene is yodB [H]

Identifier: 66767585

GI number: 66767585

Start: 1538784

End: 1539347

Strand: Reverse

Name: yodB [H]

Synonym: XC_1258

Alternate gene names: 66767585

Gene position: 1539347-1538784 (Counterclockwise)

Preceding gene: 66767586

Following gene: 66767584

Centisome position: 29.9

GC content: 67.2

Gene sequence:

>564_bases
ATGAGCCTGAAGAATGTCGAGCGCTGGGGCGGCGTCAGCCAGACCCTGCACTGGTTGATCGCGCTGCTGATCCTGGTGCT
GGGCATCGTGGGCCTGACCATGGGCGAGCTGCCCAAGACGCCCAAGTATTTCTGGGTCTACACCGCGCACAAATCCGTGG
GCCTGACCGTGCTGGCCCTGGTCATCGCCCGCCTGGGCTGGCGGCTGTATGCCGGCGCCCCGCCACCGGTGCCGGGCACG
CCAAGCTGGCAGGAACGCATCGCCGGGTTCACCCACTGGCTGCTGTACGCGATGATCTTTGCGATGCCGCTGTCCGGGTG
GCTGTACGACTCCACCAGCGGGCTGCGCCCGTTCCGCTGGTTCGGCCTGTTCAACGTGCCCAAGCTCAGCGCACCGGACG
AGCAGCTGCGCGCGGTGTCCCACACCGTGCACGAATGGGGCTTCTGGCTGTTGATTGCCGTGGTCCTGGCGCACGCCGGC
GCCGCGCTCTACCACCATCTCTTCCAACGCGATGCCACGCTGACGCGCATGCTGCCGCGTGGCTGGCTCTCCCCCAAACC
GTAA

Upstream 100 bases:

>100_bases
GCGAAGGGCGCGCCGACAGCGACGACGATGCCGGCAAGACCACCGAGCCCGCCGCGCCGGAGCAACCCGCACCAGCGACC
ACCGATACGGAGAGCGGCCG

Downstream 100 bases:

>100_bases
AGGATGTCGCATGTCTTCCAGGCTGTTTGCCTCCCCCCTGCTGGTAGCGTCCGCGCTGGTCGCCACCTTCGCCGCCGCCC
CGGTGCTGGCCGCCGACTAT

Product: cytochrome B561

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MSLKNVERWGGVSQTLHWLIALLILVLGIVGLTMGELPKTPKYFWVYTAHKSVGLTVLALVIARLGWRLYAGAPPPVPGT
PSWQERIAGFTHWLLYAMIFAMPLSGWLYDSTSGLRPFRWFGLFNVPKLSAPDEQLRAVSHTVHEWGFWLLIAVVLAHAG
AALYHHLFQRDATLTRMLPRGWLSPKP

Sequences:

>Translated_187_residues
MSLKNVERWGGVSQTLHWLIALLILVLGIVGLTMGELPKTPKYFWVYTAHKSVGLTVLALVIARLGWRLYAGAPPPVPGT
PSWQERIAGFTHWLLYAMIFAMPLSGWLYDSTSGLRPFRWFGLFNVPKLSAPDEQLRAVSHTVHEWGFWLLIAVVLAHAG
AALYHHLFQRDATLTRMLPRGWLSPKP
>Mature_186_residues
SLKNVERWGGVSQTLHWLIALLILVLGIVGLTMGELPKTPKYFWVYTAHKSVGLTVLALVIARLGWRLYAGAPPPVPGTP
SWQERIAGFTHWLLYAMIFAMPLSGWLYDSTSGLRPFRWFGLFNVPKLSAPDEQLRAVSHTVHEWGFWLLIAVVLAHAGA
ALYHHLFQRDATLTRMLPRGWLSPKP

Specific function: Unknown

COG id: COG3038

COG function: function code C; Cytochrome B561

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b561 family [H]

Homologues:

Organism=Escherichia coli, GI87082013, Length=176, Percent_Identity=31.8181818181818, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1787296, Length=184, Percent_Identity=31.5217391304348, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 21077; Mature: 20946

Theoretical pI: Translated: 10.60; Mature: 10.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKNVERWGGVSQTLHWLIALLILVLGIVGLTMGELPKTPKYFWVYTAHKSVGLTVLAL
CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHH
VIARLGWRLYAGAPPPVPGTPSWQERIAGFTHWLLYAMIFAMPLSGWLYDSTSGLRPFRW
HHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
FGLFNVPKLSAPDEQLRAVSHTVHEWGFWLLIAVVLAHAGAALYHHLFQRDATLTRMLPR
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GWLSPKP
CCCCCCC
>Mature Secondary Structure 
SLKNVERWGGVSQTLHWLIALLILVLGIVGLTMGELPKTPKYFWVYTAHKSVGLTVLAL
CCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHH
VIARLGWRLYAGAPPPVPGTPSWQERIAGFTHWLLYAMIFAMPLSGWLYDSTSGLRPFRW
HHHHHCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHH
FGLFNVPKLSAPDEQLRAVSHTVHEWGFWLLIAVVLAHAGAALYHHLFQRDATLTRMLPR
HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GWLSPKP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]