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The map label for this gene is kdsD [H]

Identifier: 66047369

GI number: 66047369

Start: 4931039

End: 4932013

Strand: Direct

Name: kdsD [H]

Synonym: Psyr_4142

Alternate gene names: 66047369

Gene position: 4931039-4932013 (Clockwise)

Preceding gene: 66047357

Following gene: 66047370

Centisome position: 80.92

GC content: 61.33

Gene sequence:

>975_bases
ATGAACCAATCCAGTGACCTGATCCAATCGGCGCAACGCACCATTCGCCTTGAGATAGAAGCCATGCAAGGCTTGCTTGA
ACGTCTTGACGGCGATTTTGTGCGCGCGTGCGAAATGATCCTCGCCAGCAAAGGGCGCGTGGTCGTGGTCGGCATGGGCA
AGTCCGGACACATCGGCAACAAGATCGCCGCCACGCTGGCGAGCACCGGCACCACCTCGTTTTTCGTGCATCCGGCCGAA
GCCAGCCATGGCGACATGGGCATGATCACCCGTGATGACATCATCCTGGCCCTGTCGAACTCCGGCAGCACCAACGAAAT
CGTCACCCTGCTGCCACTGATCAAGCGCCTGGGCATAAAGATGATCAGCCTGACCGGCGACCCCGAGTCCATTCTGGCCA
AGGCTGCCGACATCAACCTCAACGCGCATGTCGTGCATGAGGCCTGCCCGCTCAACCTGGCACCGACGTCCTCGACAACC
GCCGCACTGGTCATGGGCGACGCCCTCGCCGTGGCGCTGCTCGACGCGCGCGGTTTCACTGCCGAAGATTTCGCATTCTC
CCACCCAGGCGGCGCACTGGGTCGCCGCCTGCTGCTCAAGGTCGAGAATGTGATGCACTCCGGCGAATCACTGCCCAGCG
TGCAACGTGGCACCCTGTTGCGCGACGCACTGCTTGAAATGACTCGTAAAGGTTTGGGCATGACGGCCATCGTCGAAGCC
GACGGCACACTGGCCGGCATCTTCACGGACGGTGACTTGCGCCGGACACTGGACCGCCCCGTCGATATCCGCCAGACCAT
CATCGACGAGGTCATGACGCTTCATGGCAAGACCGCCCATGCCGAGATGCTCGCCGCCGAGGCGCTGAAAATCATGGAGG
ACAACAAAATCAGTGCGCTTGTTGTCGTAGACCAGAACGACCGGCCGGTTGGCGCATTCAACCTGCAGGATCTCCTGCGC
GCAGGCGTCATGTAA

Upstream 100 bases:

>100_bases
AGGAAATTCGTTTAAAAACAACACAACGACGATCAGACGTGAGGGAATCGTTCATTACCGCTATAATCGCCGCCTTTCAG
CAGGCTGACCCTTTCCAGAC

Downstream 100 bases:

>100_bases
TGGAAACCGAAATAATGACTCAGGATCTCATGCAACGCGGCAAGGCCATCAAGCTGGCAGTCTTCGATGTCGATGGCGTG
CTGACCGATGGCCGCCTTTA

Product: KpsF/GutQ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MNQSSDLIQSAQRTIRLEIEAMQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHIGNKIAATLASTGTTSFFVHPAE
ASHGDMGMITRDDIILALSNSGSTNEIVTLLPLIKRLGIKMISLTGDPESILAKAADINLNAHVVHEACPLNLAPTSSTT
AALVMGDALAVALLDARGFTAEDFAFSHPGGALGRRLLLKVENVMHSGESLPSVQRGTLLRDALLEMTRKGLGMTAIVEA
DGTLAGIFTDGDLRRTLDRPVDIRQTIIDEVMTLHGKTAHAEMLAAEALKIMEDNKISALVVVDQNDRPVGAFNLQDLLR
AGVM

Sequences:

>Translated_324_residues
MNQSSDLIQSAQRTIRLEIEAMQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHIGNKIAATLASTGTTSFFVHPAE
ASHGDMGMITRDDIILALSNSGSTNEIVTLLPLIKRLGIKMISLTGDPESILAKAADINLNAHVVHEACPLNLAPTSSTT
AALVMGDALAVALLDARGFTAEDFAFSHPGGALGRRLLLKVENVMHSGESLPSVQRGTLLRDALLEMTRKGLGMTAIVEA
DGTLAGIFTDGDLRRTLDRPVDIRQTIIDEVMTLHGKTAHAEMLAAEALKIMEDNKISALVVVDQNDRPVGAFNLQDLLR
AGVM
>Mature_324_residues
MNQSSDLIQSAQRTIRLEIEAMQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHIGNKIAATLASTGTTSFFVHPAE
ASHGDMGMITRDDIILALSNSGSTNEIVTLLPLIKRLGIKMISLTGDPESILAKAADINLNAHVVHEACPLNLAPTSSTT
AALVMGDALAVALLDARGFTAEDFAFSHPGGALGRRLLLKVENVMHSGESLPSVQRGTLLRDALLEMTRKGLGMTAIVEA
DGTLAGIFTDGDLRRTLDRPVDIRQTIIDEVMTLHGKTAHAEMLAAEALKIMEDNKISALVVVDQNDRPVGAFNLQDLLR
AGVM

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=319, Percent_Identity=55.7993730407524, Blast_Score=360, Evalue=1e-101,
Organism=Escherichia coli, GI87082151, Length=321, Percent_Identity=48.5981308411215, Blast_Score=291, Evalue=5e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 34479; Mature: 34479

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSSDLIQSAQRTIRLEIEAMQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHIGN
CCCHHHHHHHHHHHEEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCH
KIAATLASTGTTSFFVHPAEASHGDMGMITRDDIILALSNSGSTNEIVTLLPLIKRLGIK
HHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHCCCE
MISLTGDPESILAKAADINLNAHVVHEACPLNLAPTSSTTAALVMGDALAVALLDARGFT
EEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEHHHHEEEEECCCCCC
AEDFAFSHPGGALGRRLLLKVENVMHSGESLPSVQRGTLLRDALLEMTRKGLGMTAIVEA
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
DGTLAGIFTDGDLRRTLDRPVDIRQTIIDEVMTLHGKTAHAEMLAAEALKIMEDNKISAL
CCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEE
VVVDQNDRPVGAFNLQDLLRAGVM
EEECCCCCCCCCCCHHHHHHHCCC
>Mature Secondary Structure
MNQSSDLIQSAQRTIRLEIEAMQGLLERLDGDFVRACEMILASKGRVVVVGMGKSGHIGN
CCCHHHHHHHHHHHEEEEHHHHHHHHHHHCCHHHHHHHHHHHCCCCEEEEECCCCCCCCH
KIAATLASTGTTSFFVHPAEASHGDMGMITRDDIILALSNSGSTNEIVTLLPLIKRLGIK
HHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEEECCCCCHHHHHHHHHHHHCCCE
MISLTGDPESILAKAADINLNAHVVHEACPLNLAPTSSTTAALVMGDALAVALLDARGFT
EEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCEEEEEHHHHEEEEECCCCCC
AEDFAFSHPGGALGRRLLLKVENVMHSGESLPSVQRGTLLRDALLEMTRKGLGMTAIVEA
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
DGTLAGIFTDGDLRRTLDRPVDIRQTIIDEVMTLHGKTAHAEMLAAEALKIMEDNKISAL
CCCEEEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEE
VVVDQNDRPVGAFNLQDLLRAGVM
EEECCCCCCCCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]