| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is rapA [H]
Identifier: 66047069
GI number: 66047069
Start: 4577266
End: 4580112
Strand: Direct
Name: rapA [H]
Synonym: Psyr_3842
Alternate gene names: 66047069
Gene position: 4577266-4580112 (Clockwise)
Preceding gene: 66047066
Following gene: 66047070
Centisome position: 75.11
GC content: 62.38
Gene sequence:
>2847_bases ATGGCGCAGCAGTATCAACCGGGGCAACGCTGGATTAGTGACAGCGAAGCCGAGCTGGGTTTGGGCACCGTTCTGGCACA GGACGGCCGCTTGTTGACCGTGCTCTATCCGGCCACTGGCGAAACACGTCAGTACGCACTGCGTAACGCGCCGCTGACCC GCGTGCGCTTCTCCCCTGGCGACGTGATCACGCACTTCGAAAACTGGAAAATGACCGTTCGCGAAGTCGACGATGTCGAT GGCCTGCTGGTCTACCACGGCCTGAACGCGCAGAACGAACTGGTCACGCTGCCGGAAACCCAGTTGTCGAACTTCATCCA GTTCCGCCTGGCGACCGACCGTCTGTTCGCCGGCCAGATCGACCAGTTGTCGTGGTTCTCGTTGCGCTACAACACGCTCG AGCACACCAGCCGCCAATTGCAGTCCTCGCTCTGGGGCCTGGGTGGCGTGCGCGCACAGCCTATCGCCCACCAGTTGCAC ATCGCTCGTGAAGTTGCAGACCGCATCGCGCCACGCGTTCTGCTGGCCGACGAAGTGGGCCTGGGTAAAACCATCGAAGC CGGCCTGGTGATCCATCGCCAACTGCTGTCGGGCCGCGCCAGCCGCGTGCTGATCCTGGTCCCGGAAAACCTCCAGCACC AGTGGCTGGTGGAGATGCGTCGTCGCTTCAACCTGCAGGTCGCGCTGTTCGACGCCGAGCGCTTCATGGAAAGCGATGCC GGCAACCCGTTCGAAGACACCCAGCTCGCGCTGGTTGCCCTGGAATGGCTGGTCGAAGACGAAAAAGCCCAGGACGCCCT GTTTGCGGCAGGCTGGGACCTGATGGTGGTTGACGAAGCGCACCACCTGGTCTGGCACGAAGACAAGGCCAGCCGCGAAT ATTCGCTGGTCGAACAGCTGGCCGAAGTCATTGCTGGCGTACTGCTGCTGACCGCGACGCCGGAACAACTGGGCCAGGAC AGCCACTTTGCCCGTCTGCGCCTGCTGGACCCGAACCGTTTCCACGACCTCAAGGCCTTCCGTGCCGAGAGCGAGAACTA TCGCCCGGTGGCTCAGGCCGTTCAGGAACTGCTCGACAAGGGCAAGCTGTCCGCAGCAGCACAAGAGACCATTCACGGCT TCCTGGGTGCCGAAGGCGATTCGCTGCTGGCCGCGGTGAATACCGGCGACGAAGAAGCCAAATCGCGTCTGATTCGTGAA CTGCTCGACCGTCACGGCACCGGCCGCGTGCTGTTCCGCAACACCCGTGCCGCGGTGCAGGGTTTCCCGGAGCGCAAGCT GCATCAATACCCGCTGCCCTGCCCCGTCGAATACCTCGAATTGCCGGTCGGCGAGCACGCCGACCTTTACCCGGAAGTCA GCTTCCAGTCGCATTCGGACGTCAGTGAAGAAGAGCGCTGGTGGCGCTTCGACCCACGCGTCGACTGGCTGATCGATACC CTGAAAATGCTCAAGCGCGTCAAGGTGCTGGTGATCTGTGCCCACGCCGAAACCGCCATGGACCTGGAAGACGCGCTGCG TGTGCGTTCCGGCATTCCTGCCACGGTGTTCCACGAAGGCATGAACATTCTCGAGCGCGACCGTGCCGCGGCCTATTTTG CGGACGAAGAGTTCGGCGCCCAGGTGCTGATCTGTTCGGAAATCGGCAGCGAAGGCCGCAACTTCCAGTTCTCCCACCAT CTGGTCCTGTTCGATCTGCCGTCGCACCCGGACTTGCTGGAGCAGCGTATCGGGCGTCTGGACCGGATCGGCCAGAAGCA CACCATCGAGCTGCACGTGCCTTTCCTGGAAACCAGTCCGCAGGCCCGCCTGTTCCAGTGGTATCACGAAGCGCTCAACG CGTTCCTCAATACCTGCCCGACCGGCAACGCCCTGCAGCATCAGTTCGGCCCGCGCCTGCTGCCGCTGCTGGAAAGCGGT GACGACGACAAGTGGCAAACCCTGATCAATGAAGCCCGCAGCGAACGCGAGCGTCTGGAAAGCGAACTGCACACCGGTCG CGACCGCTTGCTGGAGCTCAATTCCGGCGGCGCTGGCGAAGGTGAAGCGCTGGTCGAAGCAATCCTCGATCAGGACGATC AGTTCAGCCTGCCGATCTACATGGAAACCCTGTTCGACGCGTTTGGCATCGACAGCGAGGACCATTCGGAAAACGCCCTG ATCCTCAAACCGAGTGAAAAGATGCTCGACGCCAGCTTCCCGCTGGGCGACGACGAAGGCGTGACCATTACCTACGACCG CAATCAGGCGCTGTCCCGCGAGGACATGCAGTTCATCACCTGGGAGCACCCGATGGTGCAAGGCGGCATGGACCTGGTGC TGTCCGGCTCGATGGGCAACACCGCCGTGGCACTGATCAAGAACAAGGCGCTCAAGCCGGGCACCGTTCTGCTCGAACTG ATCTACGTCAGCGAAGTGGTTGCGCCTCGTTCTCTGCAGCTGGGACGTTATCTGCCGCCTGCCGCGCTGCGCTGCCTGCT CGACCCGAATGGCAACGATCTGGCCAGCCGTGTGTCGTTCAACACGCTCAATGATCAGCTCGAAAGCGTGCCCCGTGCCA GCGCCAACAAGTTCATCCAGGCCCAACGTGACCAACTGACCCCGAGGATCAACGCGGGCGAAGAGAAAATCATGCCGAAA CACGCCGAGCGCGTCGCCGAAGCGCAGCGTCGCCTGGCAGCCGACACCGAAGAAGAACTGGCCCGCCTGACGGCATTGCA AGCGGTCAACCCGACCGTGCGCGACAGTGAACTGGTGGCTCTGCGCACTCAACGTGAACAGGGTCTGGCCATGCTTGAAA AAGCGGCCCTGCGTCTGGAAGCGATCCGGGTACTGGTCGCAGGCTGA
Upstream 100 bases:
>100_bases ATAGGTTCCGGCGCTGACCATGAGTTTTTTCACGCCGCCTTTGGCCTTCGGGGCGCGTTCCGTTAACATACTCAGCTTTT TCAAGCGGGAGACAGGCAGC
Downstream 100 bases:
>100_bases GGCCGGTTACACACCCGCCTGCCACGCCCATGCACCGCATGGGCATGGCGCTCCTGCTCAGGCTATGACGCAGAGCGTCA TGAAAGGCGTTCCCACGCTG
Product: ATP-dependent helicase HepA
Products: NA
Alternate protein names: ATP-dependent helicase hepA [H]
Number of amino acids: Translated: 948; Mature: 947
Protein sequence:
>948_residues MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDVITHFENWKMTVREVDDVD GLLVYHGLNAQNELVTLPETQLSNFIQFRLATDRLFAGQIDQLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLH IAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFMESDA GNPFEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASREYSLVEQLAEVIAGVLLLTATPEQLGQD SHFARLRLLDPNRFHDLKAFRAESENYRPVAQAVQELLDKGKLSAAAQETIHGFLGAEGDSLLAAVNTGDEEAKSRLIRE LLDRHGTGRVLFRNTRAAVQGFPERKLHQYPLPCPVEYLELPVGEHADLYPEVSFQSHSDVSEEERWWRFDPRVDWLIDT LKMLKRVKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHH LVLFDLPSHPDLLEQRIGRLDRIGQKHTIELHVPFLETSPQARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLESG DDDKWQTLINEARSERERLESELHTGRDRLLELNSGGAGEGEALVEAILDQDDQFSLPIYMETLFDAFGIDSEDHSENAL ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLEL IYVSEVVAPRSLQLGRYLPPAALRCLLDPNGNDLASRVSFNTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIMPK HAERVAEAQRRLAADTEEELARLTALQAVNPTVRDSELVALRTQREQGLAMLEKAALRLEAIRVLVAG
Sequences:
>Translated_948_residues MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDVITHFENWKMTVREVDDVD GLLVYHGLNAQNELVTLPETQLSNFIQFRLATDRLFAGQIDQLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLH IAREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFMESDA GNPFEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASREYSLVEQLAEVIAGVLLLTATPEQLGQD SHFARLRLLDPNRFHDLKAFRAESENYRPVAQAVQELLDKGKLSAAAQETIHGFLGAEGDSLLAAVNTGDEEAKSRLIRE LLDRHGTGRVLFRNTRAAVQGFPERKLHQYPLPCPVEYLELPVGEHADLYPEVSFQSHSDVSEEERWWRFDPRVDWLIDT LKMLKRVKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHH LVLFDLPSHPDLLEQRIGRLDRIGQKHTIELHVPFLETSPQARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLESG DDDKWQTLINEARSERERLESELHTGRDRLLELNSGGAGEGEALVEAILDQDDQFSLPIYMETLFDAFGIDSEDHSENAL ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLEL IYVSEVVAPRSLQLGRYLPPAALRCLLDPNGNDLASRVSFNTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIMPK HAERVAEAQRRLAADTEEELARLTALQAVNPTVRDSELVALRTQREQGLAMLEKAALRLEAIRVLVAG >Mature_947_residues AQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPGDVITHFENWKMTVREVDDVDG LLVYHGLNAQNELVTLPETQLSNFIQFRLATDRLFAGQIDQLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLHI AREVADRIAPRVLLADEVGLGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFMESDAG NPFEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASREYSLVEQLAEVIAGVLLLTATPEQLGQDS HFARLRLLDPNRFHDLKAFRAESENYRPVAQAVQELLDKGKLSAAAQETIHGFLGAEGDSLLAAVNTGDEEAKSRLIREL LDRHGTGRVLFRNTRAAVQGFPERKLHQYPLPCPVEYLELPVGEHADLYPEVSFQSHSDVSEEERWWRFDPRVDWLIDTL KMLKRVKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGAQVLICSEIGSEGRNFQFSHHL VLFDLPSHPDLLEQRIGRLDRIGQKHTIELHVPFLETSPQARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLESGD DDKWQTLINEARSERERLESELHTGRDRLLELNSGGAGEGEALVEAILDQDDQFSLPIYMETLFDAFGIDSEDHSENALI LKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGNTAVALIKNKALKPGTVLLELI YVSEVVAPRSLQLGRYLPPAALRCLLDPNGNDLASRVSFNTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIMPKH AERVAEAQRRLAADTEEELARLTALQAVNPTVRDSELVALRTQREQGLAMLEKAALRLEAIRVLVAG
Specific function: Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on
COG id: COG0553
COG function: function code KL; Superfamily II DNA/RNA helicases, SNF2 family
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1786245, Length=962, Percent_Identity=51.975051975052, Blast_Score=952, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR022737 - InterPro: IPR000330 [H]
Pfam domain/function: PF00271 Helicase_C; PF12137 RapA_C; PF00176 SNF2_N [H]
EC number: 3.6.1.- [C]
Molecular weight: Translated: 106665; Mature: 106534
Theoretical pI: Translated: 4.85; Mature: 4.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPG CCCCCCCHHHHCCCCCCCCCHHHEEECCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCC DVITHFENWKMTVREVDDVDGLLVYHGLNAQNELVTLPETQLSNFIQFRLATDRLFAGQI CEEEECCCCEEEEEECCCCCCEEEEECCCCCCCEEECCHHHHHHHHHHHEEHHHHHCCCC DQLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG CCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFMESDA CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHCC GNPFEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASREYSLVEQL CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCCHHHHHHHHH AEVIAGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLKAFRAESENYRPVAQAVQELLDK HHHHHHHHHEECCHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC GKLSAAAQETIHGFLGAEGDSLLAAVNTGDEEAKSRLIRELLDRHGTGRVLFRNTRAAVQ CCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHC GFPERKLHQYPLPCPVEYLELPVGEHADLYPEVSFQSHSDVSEEERWWRFDPRVDWLIDT CCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCEECCCCHHHHHHH LKMLKRVKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA HHHHHHCEEEEEEECCHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCCCCC QVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQKHTIELHVPFLETSP EEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECEECCCC QARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLESGDDDKWQTLINEARSERERLE HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHH SELHTGRDRLLELNSGGAGEGEALVEAILDQDDQFSLPIYMETLFDAFGIDSEDHSENAL HHHHCCCHHEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEE ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN EECCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCHHHCCCEEEEECCCCC TAVALIKNKALKPGTVLLELIYVSEVVAPRSLQLGRYLPPAALRCLLDPNGNDLASRVSF EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEEECCCCCCHHHHHHH NTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIMPKHAERVAEAQRRLAADTEEEL HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHH ARLTALQAVNPTVRDSELVALRTQREQGLAMLEKAALRLEAIRVLVAG HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AQQYQPGQRWISDSEAELGLGTVLAQDGRLLTVLYPATGETRQYALRNAPLTRVRFSPG CCCCCCHHHHCCCCCCCCCHHHEEECCCCEEEEEECCCCCHHHHHHHCCCCEEEEECCC DVITHFENWKMTVREVDDVDGLLVYHGLNAQNELVTLPETQLSNFIQFRLATDRLFAGQI CEEEECCCCEEEEEECCCCCCEEEEECCCCCCCEEECCHHHHHHHHHHHEEHHHHHCCCC DQLSWFSLRYNTLEHTSRQLQSSLWGLGGVRAQPIAHQLHIAREVADRIAPRVLLADEVG CCCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC LGKTIEAGLVIHRQLLSGRASRVLILVPENLQHQWLVEMRRRFNLQVALFDAERFMESDA CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEECHHHHHHHCC GNPFEDTQLALVALEWLVEDEKAQDALFAAGWDLMVVDEAHHLVWHEDKASREYSLVEQL CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEECCCCEEEECCCCCHHHHHHHHH AEVIAGVLLLTATPEQLGQDSHFARLRLLDPNRFHDLKAFRAESENYRPVAQAVQELLDK HHHHHHHHHEECCHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHC GKLSAAAQETIHGFLGAEGDSLLAAVNTGDEEAKSRLIRELLDRHGTGRVLFRNTRAAVQ CCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHC GFPERKLHQYPLPCPVEYLELPVGEHADLYPEVSFQSHSDVSEEERWWRFDPRVDWLIDT CCCHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHCEECCCCHHHHHHH LKMLKRVKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMNILERDRAAAYFADEEFGA HHHHHHCEEEEEEECCHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCCCCC QVLICSEIGSEGRNFQFSHHLVLFDLPSHPDLLEQRIGRLDRIGQKHTIELHVPFLETSP EEEEEECCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEECEECCCC QARLFQWYHEALNAFLNTCPTGNALQHQFGPRLLPLLESGDDDKWQTLINEARSERERLE HHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEHHHCCCCCHHHHHHHHHHHHHHHHHH SELHTGRDRLLELNSGGAGEGEALVEAILDQDDQFSLPIYMETLFDAFGIDSEDHSENAL HHHHCCCHHEEEECCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEE ILKPSEKMLDASFPLGDDEGVTITYDRNQALSREDMQFITWEHPMVQGGMDLVLSGSMGN EECCCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCEEEEECCCHHHCCCEEEEECCCCC TAVALIKNKALKPGTVLLELIYVSEVVAPRSLQLGRYLPPAALRCLLDPNGNDLASRVSF EEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHEEEECCCCCCHHHHHHH NTLNDQLESVPRASANKFIQAQRDQLTPRINAGEEKIMPKHAERVAEAQRRLAADTEEEL HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCHHHH ARLTALQAVNPTVRDSELVALRTQREQGLAMLEKAALRLEAIRVLVAG HHHHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA