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The map label for this gene is yciR [C]

Identifier: 66047070

GI number: 66047070

Start: 4580648

End: 4582939

Strand: Direct

Name: yciR [C]

Synonym: Psyr_3843

Alternate gene names: 66047070

Gene position: 4580648-4582939 (Clockwise)

Preceding gene: 66047069

Following gene: 66047072

Centisome position: 75.17

GC content: 59.25

Gene sequence:

>2292_bases
ATGGATTGGCTGGGTTTGAACGTATTCGCTGACCCACCAGCGGACGTGCAATTATTGATCGACTGTAGTCACAACCTGTT
TCTGGTCGCGCTGGCTTACGGCGTGGCCTGTGCTGCGTGCTTTGCCACGCTGGATATTGCGGACCGTGTCATCCAGGTCG
ACGCCCTCAAAAGCCGTCGCCTCTGGAAAGCGCTGGGCGCGTTGTGCCTGGCCGGTGGCGTGTGGGCGATGCATTTCATC
AGTATGCTGGCCTTTCAGGCACCGCTCAAAATCGCTTACGACCTCTCCATCACGCTGATTTCCCTTCTGATCGTATTGAT
TACCGCATTGGTGGCCATGCGAGCACTGACAGTCCCGGAACTGACTCTGAGACGCTGCCTGATCAGCGCGGTGGTGATGG
GGGTCGGCATCAGCGTCATGCACTACCTGGGCATGTCGGCCATGCGCTCCACTGCCACGCAGTACTACGAGCCGCGGATG
TTCGCCCTGTCGATTCTGGTCGCAGTCCTCTCCAGCATTGCGCTCCTGACACTGCCGCGGCACTTGCGCCAGTACAACGG
CATGTTTCATCAGATGTTCCGATATGCGGTCAGCCTTCTGCTGGGCGCGGGCCTGTTGACCATGCACCTGATGGGCATGA
AGGCGCTGCGGCTGGTGATCCCGGAAGGCACTGAGCTGCACGGGCCCGCCACCGAAAACAGCCAACAGCTGGGGCTGACC
ATCGCGGCCATCGCCCTGCTGATCATCGCCGGCAGCATCAGTGCGGCAATGGCTGACAAGAAACTGCAAGGCAAGGAGCA
TGACCTGCAGCGGGTCAATGCACTGCTTACCCAGCTGGATCAGGCACGCGTCTCGCTTCAGCAGGTTGCGCATTACGACC
CGCTGACCAATCTGATCAACCGCCGCGGTTTCAATCAGATCTTCGCCGAGAAGCTGCAGGAGCACACTTACAACAACGGC
ATGCTCGCAGTGATGTTCCTCGACATCGACCACTTCAAGCGCATCAATGACAGCCTGGGCCATGATGCGGGTGACGAGCT
GCTCAAAGTGATAGCCGACCGCATCCGTGGTGCTACCCGGGTTCAGGACGTGGTAGCGCGCTTCGGCGGCGATGAATTCT
GCATCCTGCTGAGCATTCCGGACTACGAAGAGGCACGACACCTGGCCCATCGAGTCATGCAAAAAATGAAAGAGACCATC
GCGCTGGCAGGAAGACGCATGGTCATGACCACCAGTATCGGTATTGCCGTGTTCCCGCGTGACGGTTCGACCTGCGATGA
GCTGCTCAAGCACGCGGACCTCGCGCTCTACCAGTCCAAGGACAAAGGGCGCAACGGCGTCAACTTCTTCAACCCGGCGC
TCAAGACCAAGGCCAGTCTGGAGCTGCAACTGGAAGAAGAACTGCGCAATGCCCTGCGCGAAGGCACGGGGCTGCAGGTG
TACTACCAGCCTATCGTCGACATGCGCACCGGCCACGTTGCCAAGCTCGAGGCGCTGGTGCGCTGGAATCATCCGCACCA
CGGCCTGCTGGTACCCGCCCGCTTCATCGGCATTGCCGAAGCCAACGGCCTGATTGCAGAGCTGGATAACTGGGTGCTGC
GCCGCGCCTGTCACGACCTGCGCACTCTGCATCAGGAAGGGCTGGAACAGCTGATCATCTCGGTCAACTGCTCAGCGCTG
ACGCTGGGCCGCAACGAGTTGGTCGAAGAGGTTGAACGGGCGCTGGCCGATGCTGACGCAGCGCCTGGACGGCTGGAACT
GGAGGTCACCGAAAATGCCTTGATGGGCAACATCAGCAACACCATCCTGATGCTCAAGCACATTCGCAGCCTGGGTGTTT
CCCTGTCGATCGACGACTTCGGCACGGGTTACTCGTCGCTCGCCTATCTCAAGCGGCTGCCACTGGACACGCTGAAGATC
GATCGTTCGTTCATTATCGACATTCCCCAGTCACCGCAGGATATGGAAATCGTTCAGGCAATCCTCGTCATGGCGCATAC
CCTGCGCTTGAAAGTCGTGACGGAGGGCGTCGAAACCCAGGCTCAGCTGGAGTTTCTCAGGCAGTTTGGCAGTGATTACG
TACAAGGTTATATGTTCAGCAGGCCTCAGCCGCTGGAGCGAATCCTGCCCCTCGCCAGACAGATGAATGAGCGTGAGGCC
AGCTTGCAGTGGTCTGCCCTGCCACCACCGTATGCCCACGGACCTGACATCGGGATATCAGAAGCATCGGATGTGTTCGC
CGAACTGTCTGACAGTGACGATTTCGCCAGTCACAGACCTGTTCGCACCTGA

Upstream 100 bases:

>100_bases
TGGCACCTCGTGTATTGGCAGGTTGTAAACAGCTTCTATACTCACCTTACAACGCCAGGCTTTCAGCCCTGGCGCCCTTG
CAGTGAGAATAGGGCAAGCT

Downstream 100 bases:

>100_bases
AGCGGCGCTGCATGGAACCATCGCCGAAAAGCCAGCACAGCCCGCTGAAACCGCCACCTCGAAAGGTGTGGTTTTACGCT
ACGCGGGCTGCCAAAGAGTT

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 763; Mature: 763

Protein sequence:

>763_residues
MDWLGLNVFADPPADVQLLIDCSHNLFLVALAYGVACAACFATLDIADRVIQVDALKSRRLWKALGALCLAGGVWAMHFI
SMLAFQAPLKIAYDLSITLISLLIVLITALVAMRALTVPELTLRRCLISAVVMGVGISVMHYLGMSAMRSTATQYYEPRM
FALSILVAVLSSIALLTLPRHLRQYNGMFHQMFRYAVSLLLGAGLLTMHLMGMKALRLVIPEGTELHGPATENSQQLGLT
IAAIALLIIAGSISAAMADKKLQGKEHDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTYNNG
MLAVMFLDIDHFKRINDSLGHDAGDELLKVIADRIRGATRVQDVVARFGGDEFCILLSIPDYEEARHLAHRVMQKMKETI
ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGTGLQV
YYQPIVDMRTGHVAKLEALVRWNHPHHGLLVPARFIGIAEANGLIAELDNWVLRRACHDLRTLHQEGLEQLIISVNCSAL
TLGRNELVEEVERALADADAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSIDDFGTGYSSLAYLKRLPLDTLKI
DRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVTEGVETQAQLEFLRQFGSDYVQGYMFSRPQPLERILPLARQMNEREA
SLQWSALPPPYAHGPDIGISEASDVFAELSDSDDFASHRPVRT

Sequences:

>Translated_763_residues
MDWLGLNVFADPPADVQLLIDCSHNLFLVALAYGVACAACFATLDIADRVIQVDALKSRRLWKALGALCLAGGVWAMHFI
SMLAFQAPLKIAYDLSITLISLLIVLITALVAMRALTVPELTLRRCLISAVVMGVGISVMHYLGMSAMRSTATQYYEPRM
FALSILVAVLSSIALLTLPRHLRQYNGMFHQMFRYAVSLLLGAGLLTMHLMGMKALRLVIPEGTELHGPATENSQQLGLT
IAAIALLIIAGSISAAMADKKLQGKEHDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTYNNG
MLAVMFLDIDHFKRINDSLGHDAGDELLKVIADRIRGATRVQDVVARFGGDEFCILLSIPDYEEARHLAHRVMQKMKETI
ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGTGLQV
YYQPIVDMRTGHVAKLEALVRWNHPHHGLLVPARFIGIAEANGLIAELDNWVLRRACHDLRTLHQEGLEQLIISVNCSAL
TLGRNELVEEVERALADADAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSIDDFGTGYSSLAYLKRLPLDTLKI
DRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVTEGVETQAQLEFLRQFGSDYVQGYMFSRPQPLERILPLARQMNEREA
SLQWSALPPPYAHGPDIGISEASDVFAELSDSDDFASHRPVRT
>Mature_763_residues
MDWLGLNVFADPPADVQLLIDCSHNLFLVALAYGVACAACFATLDIADRVIQVDALKSRRLWKALGALCLAGGVWAMHFI
SMLAFQAPLKIAYDLSITLISLLIVLITALVAMRALTVPELTLRRCLISAVVMGVGISVMHYLGMSAMRSTATQYYEPRM
FALSILVAVLSSIALLTLPRHLRQYNGMFHQMFRYAVSLLLGAGLLTMHLMGMKALRLVIPEGTELHGPATENSQQLGLT
IAAIALLIIAGSISAAMADKKLQGKEHDLQRVNALLTQLDQARVSLQQVAHYDPLTNLINRRGFNQIFAEKLQEHTYNNG
MLAVMFLDIDHFKRINDSLGHDAGDELLKVIADRIRGATRVQDVVARFGGDEFCILLSIPDYEEARHLAHRVMQKMKETI
ALAGRRMVMTTSIGIAVFPRDGSTCDELLKHADLALYQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGTGLQV
YYQPIVDMRTGHVAKLEALVRWNHPHHGLLVPARFIGIAEANGLIAELDNWVLRRACHDLRTLHQEGLEQLIISVNCSAL
TLGRNELVEEVERALADADAAPGRLELEVTENALMGNISNTILMLKHIRSLGVSLSIDDFGTGYSSLAYLKRLPLDTLKI
DRSFIIDIPQSPQDMEIVQAILVMAHTLRLKVVTEGVETQAQLEFLRQFGSDYVQGYMFSRPQPLERILPLARQMNEREA
SLQWSALPPPYAHGPDIGISEASDVFAELSDSDDFASHRPVRT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=432, Percent_Identity=33.7962962962963, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI87081921, Length=568, Percent_Identity=29.5774647887324, Blast_Score=226, Evalue=3e-60,
Organism=Escherichia coli, GI226510982, Length=417, Percent_Identity=29.2565947242206, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1790496, Length=258, Percent_Identity=33.7209302325581, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=35.2697095435685, Blast_Score=140, Evalue=4e-34,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=34.0080971659919, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=33.4677419354839, Blast_Score=134, Evalue=3e-32,
Organism=Escherichia coli, GI1788849, Length=268, Percent_Identity=32.4626865671642, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=31.1538461538462, Blast_Score=122, Evalue=1e-28,
Organism=Escherichia coli, GI1787055, Length=543, Percent_Identity=24.1252302025783, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=249, Percent_Identity=32.1285140562249, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=28.8135593220339, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=36.969696969697, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1788381, Length=446, Percent_Identity=24.8878923766816, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=33.7278106508876, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI145693134, Length=164, Percent_Identity=35.3658536585366, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=181, Percent_Identity=34.8066298342541, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=36.6863905325444, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1787802, Length=217, Percent_Identity=28.5714285714286, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87081977, Length=184, Percent_Identity=28.804347826087, Blast_Score=82, Evalue=9e-17,
Organism=Escherichia coli, GI1788085, Length=164, Percent_Identity=32.3170731707317, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1789650, Length=436, Percent_Identity=23.394495412844, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=33.5403726708075, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1788956, Length=179, Percent_Identity=31.8435754189944, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=32.2981366459627, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI87081974, Length=148, Percent_Identity=29.7297297297297, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=24.6636771300448, Blast_Score=69, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 84594; Mature: 84594

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWLGLNVFADPPADVQLLIDCSHNLFLVALAYGVACAACFATLDIADRVIQVDALKSRR
CCCEECEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWKALGALCLAGGVWAMHFISMLAFQAPLKIAYDLSITLISLLIVLITALVAMRALTVPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LTLRRCLISAVVMGVGISVMHYLGMSAMRSTATQYYEPRMFALSILVAVLSSIALLTLPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
HLRQYNGMFHQMFRYAVSLLLGAGLLTMHLMGMKALRLVIPEGTELHGPATENSQQLGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
IAAIALLIIAGSISAAMADKKLQGKEHDLQRVNALLTQLDQARVSLQQVAHYDPLTNLIN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIADRIRGATR
HCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH
VQDVVARFGGDEFCILLSIPDYEEARHLAHRVMQKMKETIALAGRRMVMTTSIGIAVFPR
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECC
DGSTCDELLKHADLALYQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGTGLQV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHEEEHHHHHHHHHHCCCCCEE
YYQPIVDMRTGHVAKLEALVRWNHPHHGLLVPARFIGIAEANGLIAELDNWVLRRACHDL
EEECHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RTLHQEGLEQLIISVNCSALTLGRNELVEEVERALADADAAPGRLELEVTENALMGNISN
HHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHCCHHH
TILMLKHIRSLGVSLSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQA
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCCEEEEECCCCCCHHHHHHH
ILVMAHTLRLKVVTEGVETQAQLEFLRQFGSDYVQGYMFSRPQPLERILPLARQMNEREA
HHHHHHHHHHHEECCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHH
SLQWSALPPPYAHGPDIGISEASDVFAELSDSDDFASHRPVRT
CCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDWLGLNVFADPPADVQLLIDCSHNLFLVALAYGVACAACFATLDIADRVIQVDALKSRR
CCCEECEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LWKALGALCLAGGVWAMHFISMLAFQAPLKIAYDLSITLISLLIVLITALVAMRALTVPE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
LTLRRCLISAVVMGVGISVMHYLGMSAMRSTATQYYEPRMFALSILVAVLSSIALLTLPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
HLRQYNGMFHQMFRYAVSLLLGAGLLTMHLMGMKALRLVIPEGTELHGPATENSQQLGLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
IAAIALLIIAGSISAAMADKKLQGKEHDLQRVNALLTQLDQARVSLQQVAHYDPLTNLIN
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
RRGFNQIFAEKLQEHTYNNGMLAVMFLDIDHFKRINDSLGHDAGDELLKVIADRIRGATR
HCCHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH
VQDVVARFGGDEFCILLSIPDYEEARHLAHRVMQKMKETIALAGRRMVMTTSIGIAVFPR
HHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEECC
DGSTCDELLKHADLALYQSKDKGRNGVNFFNPALKTKASLELQLEEELRNALREGTGLQV
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHEEEHHHHHHHHHHCCCCCEE
YYQPIVDMRTGHVAKLEALVRWNHPHHGLLVPARFIGIAEANGLIAELDNWVLRRACHDL
EEECHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
RTLHQEGLEQLIISVNCSALTLGRNELVEEVERALADADAAPGRLELEVTENALMGNISN
HHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEECHHHHCCHHH
TILMLKHIRSLGVSLSIDDFGTGYSSLAYLKRLPLDTLKIDRSFIIDIPQSPQDMEIVQA
HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCHHHCCCCEEEEECCCCCCHHHHHHH
ILVMAHTLRLKVVTEGVETQAQLEFLRQFGSDYVQGYMFSRPQPLERILPLARQMNEREA
HHHHHHHHHHHEECCCCCHHHHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHHHHCCHHHH
SLQWSALPPPYAHGPDIGISEASDVFAELSDSDDFASHRPVRT
CCEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]