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The map label for this gene is pelB [H]

Identifier: 66047066

GI number: 66047066

Start: 4574582

End: 4576213

Strand: Direct

Name: pelB [H]

Synonym: Psyr_3839

Alternate gene names: 66047066

Gene position: 4574582-4576213 (Clockwise)

Preceding gene: 66047065

Following gene: 66047069

Centisome position: 75.07

GC content: 58.52

Gene sequence:

>1632_bases
ATGAATACGATCAACAGAAACTACTACCCCGTCTCCGGGATTCCTGCGCAGGACGCCCCGGCACAGACCGATCAACTGCC
GCCTCAAGGCCAGGGCATCAAGCCGGGCCACAATAGCAACCTGATCGACTTCGGCCTGACACAGCAGGCCAATGGCCCGC
ACTCCTCGCTGAATACCCTGGGCTCCAGAGTCCAGCCGACTGACACGAACACGTCTTCAAATATGCCGGGTGGCAACGGT
GAGCAGGTACTGAACAAACTTGTGCAAGCGATCCGCAACATCCTCAACAACCTGCTCTCGCTGCTGGAAGGAAATCTACA
CAACGGCTCTGGGCCTGCACAGCCTCAACGCGATCAGACGCCGACGCTCGCTCAATCGCCCTCTTCCGCCTCCCCTTCCT
CGTCGCCGCCTTCAACACCTCAGGGCAACGCAGAAAAACCCTTTGTGGTGCAGAACGATCACCCTTCAGAAAAACCTGTA
TCACTGCAAAAGAATACAGAGCCGACGTCCGCTGCGCCGTCACAAACAGCACCCCGGACGACCGAGCGAAGCAGTGCCAC
CCCAGACAAGACACCCGCCAGACCCGATGCGGTAAACCCGGCAGTGGTCCATGACCTTGCGCTGCCGAAAACTTCGACGG
ACACCACCGCCAAACCCGATAACACGGTTAACGCAGCCAAAACCGCGACCCCGGCCGCGCATGGCCAGGGCGCGGACATG
TCCGGCATCATGGGTTTCGCCAAAGAGGCCAACACCACCGGCGGTAACGGCGGCGAAGTCGTCACGGTCAATACCGTGGC
GGACCTCAAGAAGTACATGGAGGACGACAAAGCCCGCACCGTCAAACTGGGGGCCAACCTGTCTGCCGACAGCAAGGTGA
CCATCAACTTTGGCGCCAACAAGACCCTGCTGGGCACCGACAAGGGCAACAGCCTGCACAACATCTACCTGGCCAGCGGC
AAGACCGCCAGCAATGACATCTTCCAGAACCTGAACTTCGACCACGACAGCCGTTATCGCGAAAACGGTGACATGCAGAT
GTTCATCAGCAGCGGTCAGAAATACTGGATCGACCACAACACCTATTCAGGCACCAAGGATCAGAACGCCAAAGGCCTGG
ACAAGCTGCTGTATGTCGGCGGGACGGCAGACAACGTCAGCCTGACCAACTCTAAATTCCAGAACAACGAATACGGCGTG
ATTCTTGGTCAGCCGGACGACTCCGCTCAAGCCAAGGCCGAGTACAAGGGCTACCCGCGCATGACCATCGCCAACAATGT
GTTCAGCAACCTTGATGTTCGCGCACCCGGCCTGATGCGTCATGGGCAATTTGATGTGCTCAACAACTCGATCGACAACT
TCCATCTTGGCTTCACCGCGACGGGGGATGCGACCATCCTTTCGCAGGCCAACTATTTCGCGAAAGGCGTGGATGTTTCC
GACAAGGCCAGCAACTCCGGCGTGCTGGATGACTATGGCGATGCGCACTTCAAGGACATCGGCAGCAATGTCAGCTTCAC
CCAGAAGTCAGCGGTGACCGCGTGGACGCCGAGCTATCAGCGCGACATCAAGACCGCCGAAGCCGCCAGAGCCTATGACC
AGGCCAATGCCGGCGCCAAAACCGTGAGCTGA

Upstream 100 bases:

>100_bases
TGCATCCGGAACTGCTTTTCTGCGCTTTCCACTCAGGGAACCAGTAGCGCTCCCTTATCCGGGTCACGAATTGTTCATCC
CACAGGCGGGGAAATCAGCC

Downstream 100 bases:

>100_bases
TAGCGCGCGGCGCTCGATGCAGGGCGCGGCATGCAGACGAAAAAAAGGGCGACCGAAGTCGCCCCAAGTGCCTTGCGTGC
TCATTGAATGCGTGCAGGCG

Product: type III helper protein HopAK1

Products: NA

Alternate protein names: PNL [H]

Number of amino acids: Translated: 543; Mature: 543

Protein sequence:

>543_residues
MNTINRNYYPVSGIPAQDAPAQTDQLPPQGQGIKPGHNSNLIDFGLTQQANGPHSSLNTLGSRVQPTDTNTSSNMPGGNG
EQVLNKLVQAIRNILNNLLSLLEGNLHNGSGPAQPQRDQTPTLAQSPSSASPSSSPPSTPQGNAEKPFVVQNDHPSEKPV
SLQKNTEPTSAAPSQTAPRTTERSSATPDKTPARPDAVNPAVVHDLALPKTSTDTTAKPDNTVNAAKTATPAAHGQGADM
SGIMGFAKEANTTGGNGGEVVTVNTVADLKKYMEDDKARTVKLGANLSADSKVTINFGANKTLLGTDKGNSLHNIYLASG
KTASNDIFQNLNFDHDSRYRENGDMQMFISSGQKYWIDHNTYSGTKDQNAKGLDKLLYVGGTADNVSLTNSKFQNNEYGV
ILGQPDDSAQAKAEYKGYPRMTIANNVFSNLDVRAPGLMRHGQFDVLNNSIDNFHLGFTATGDATILSQANYFAKGVDVS
DKASNSGVLDDYGDAHFKDIGSNVSFTQKSAVTAWTPSYQRDIKTAEAARAYDQANAGAKTVS

Sequences:

>Translated_543_residues
MNTINRNYYPVSGIPAQDAPAQTDQLPPQGQGIKPGHNSNLIDFGLTQQANGPHSSLNTLGSRVQPTDTNTSSNMPGGNG
EQVLNKLVQAIRNILNNLLSLLEGNLHNGSGPAQPQRDQTPTLAQSPSSASPSSSPPSTPQGNAEKPFVVQNDHPSEKPV
SLQKNTEPTSAAPSQTAPRTTERSSATPDKTPARPDAVNPAVVHDLALPKTSTDTTAKPDNTVNAAKTATPAAHGQGADM
SGIMGFAKEANTTGGNGGEVVTVNTVADLKKYMEDDKARTVKLGANLSADSKVTINFGANKTLLGTDKGNSLHNIYLASG
KTASNDIFQNLNFDHDSRYRENGDMQMFISSGQKYWIDHNTYSGTKDQNAKGLDKLLYVGGTADNVSLTNSKFQNNEYGV
ILGQPDDSAQAKAEYKGYPRMTIANNVFSNLDVRAPGLMRHGQFDVLNNSIDNFHLGFTATGDATILSQANYFAKGVDVS
DKASNSGVLDDYGDAHFKDIGSNVSFTQKSAVTAWTPSYQRDIKTAEAARAYDQANAGAKTVS
>Mature_543_residues
MNTINRNYYPVSGIPAQDAPAQTDQLPPQGQGIKPGHNSNLIDFGLTQQANGPHSSLNTLGSRVQPTDTNTSSNMPGGNG
EQVLNKLVQAIRNILNNLLSLLEGNLHNGSGPAQPQRDQTPTLAQSPSSASPSSSPPSTPQGNAEKPFVVQNDHPSEKPV
SLQKNTEPTSAAPSQTAPRTTERSSATPDKTPARPDAVNPAVVHDLALPKTSTDTTAKPDNTVNAAKTATPAAHGQGADM
SGIMGFAKEANTTGGNGGEVVTVNTVADLKKYMEDDKARTVKLGANLSADSKVTINFGANKTLLGTDKGNSLHNIYLASG
KTASNDIFQNLNFDHDSRYRENGDMQMFISSGQKYWIDHNTYSGTKDQNAKGLDKLLYVGGTADNVSLTNSKFQNNEYGV
ILGQPDDSAQAKAEYKGYPRMTIANNVFSNLDVRAPGLMRHGQFDVLNNSIDNFHLGFTATGDATILSQANYFAKGVDVS
DKASNSGVLDDYGDAHFKDIGSNVSFTQKSAVTAWTPSYQRDIKTAEAARAYDQANAGAKTVS

Specific function: Catalyzes the depolymerization of pectins of methyl esterification degree from 13 to 75%, with an endo mode of action. Can not degrade polygalacturonate [H]

COG id: COG3866

COG function: function code G; Pectate lyase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002022
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00544 Pec_lyase_C [H]

EC number: =4.2.2.10 [H]

Molecular weight: Translated: 57628; Mature: 57628

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTINRNYYPVSGIPAQDAPAQTDQLPPQGQGIKPGHNSNLIDFGLTQQANGPHSSLNTL
CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHH
GSRVQPTDTNTSSNMPGGNGEQVLNKLVQAIRNILNNLLSLLEGNLHNGSGPAQPQRDQT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PTLAQSPSSASPSSSPPSTPQGNAEKPFVVQNDHPSEKPVSLQKNTEPTSAAPSQTAPRT
CCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCC
TERSSATPDKTPARPDAVNPAVVHDLALPKTSTDTTAKPDNTVNAAKTATPAAHGQGADM
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH
SGIMGFAKEANTTGGNGGEVVTVNTVADLKKYMEDDKARTVKLGANLSADSKVTINFGAN
HHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCC
KTLLGTDKGNSLHNIYLASGKTASNDIFQNLNFDHDSRYRENGDMQMFISSGQKYWIDHN
EEEEECCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEEECC
TYSGTKDQNAKGLDKLLYVGGTADNVSLTNSKFQNNEYGVILGQPDDSAQAKAEYKGYPR
CCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCEEEEEECCCCCHHHHHHHCCCCC
MTIANNVFSNLDVRAPGLMRHGQFDVLNNSIDNFHLGFTATGDATILSQANYFAKGVDVS
EEEHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCEEEECCCHHHHCCCCCC
DKASNSGVLDDYGDAHFKDIGSNVSFTQKSAVTAWTPSYQRDIKTAEAARAYDQANAGAK
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCC
TVS
CCC
>Mature Secondary Structure
MNTINRNYYPVSGIPAQDAPAQTDQLPPQGQGIKPGHNSNLIDFGLTQQANGPHSSLNTL
CCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHH
GSRVQPTDTNTSSNMPGGNGEQVLNKLVQAIRNILNNLLSLLEGNLHNGSGPAQPQRDQT
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
PTLAQSPSSASPSSSPPSTPQGNAEKPFVVQNDHPSEKPVSLQKNTEPTSAAPSQTAPRT
CCHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCC
TERSSATPDKTPARPDAVNPAVVHDLALPKTSTDTTAKPDNTVNAAKTATPAAHGQGADM
CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCH
SGIMGFAKEANTTGGNGGEVVTVNTVADLKKYMEDDKARTVKLGANLSADSKVTINFGAN
HHHHHHHHHCCCCCCCCCCEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCEEEEEECCC
KTLLGTDKGNSLHNIYLASGKTASNDIFQNLNFDHDSRYRENGDMQMFISSGQKYWIDHN
EEEEECCCCCCEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEEECC
TYSGTKDQNAKGLDKLLYVGGTADNVSLTNSKFQNNEYGVILGQPDDSAQAKAEYKGYPR
CCCCCCCCCCCCCCEEEEECCCCCCCEECCCCCCCCCEEEEEECCCCCHHHHHHHCCCCC
MTIANNVFSNLDVRAPGLMRHGQFDVLNNSIDNFHLGFTATGDATILSQANYFAKGVDVS
EEEHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCEEEECCCHHHHCCCCCC
DKASNSGVLDDYGDAHFKDIGSNVSFTQKSAVTAWTPSYQRDIKTAEAARAYDQANAGAK
CCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCC
TVS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]