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The map label for this gene is ycdO [H]

Identifier: 66046597

GI number: 66046597

Start: 4026731

End: 4027942

Strand: Direct

Name: ycdO [H]

Synonym: Psyr_3368

Alternate gene names: 66046597

Gene position: 4026731-4027942 (Clockwise)

Preceding gene: 66046596

Following gene: 66046598

Centisome position: 66.08

GC content: 64.85

Gene sequence:

>1212_bases
ATGTCTAACCGTCCCTCAGGGCCTTCCGGGAAAGCCCGGCCGCCCCGTGTCCTGCGATTGGCAGTCGCCGGCTCAGTGAT
CCTGATGATCGCCGCAGGCGGGCTGTTCTACTACGCCTCGCAGGTCGCCGCGAAAAAGCGCGCAGCCAATGCCGGAACTG
AAACCGTGGTCAATATCCACGCGCACAACTGCGAACCGAACGCCTTGACGGTCGCGGCGGGCAACAACGCCTTCCGCATC
GTCAACCGCTCCGAGCGCGCCGTCGAATGGGAAATTCTCGATGGCGTGCTGGTGATCGAAGAGCGGGAAAACATCGCGCC
GGGCCTGAGCCAGGTGATCAATGCCAACCTGGCACCCGGCGATTACACGATTACCTGCGGTCTGCTGAGCAATCCGCGCG
GCACCTTGCACGTCACGCCGACGGCAGAGTCCGACGCCAAGGCCAAGGCGCGTCCGTCCATGACCGCTTTCATCGGGCCG
CTCTCCGAGTACCGCGTGTACCTGAGCCTGCAGAGTTCGGCGCTGATCAAGGCAGTCACCGCCCTGCAACAGGCCATTGA
TGCCGGCGACCTGAGCGCCGCCCAGGCGGCCTACCTGCCAGCCCGCGCCGCCTACCAGCGCATTGCACCGGCTGCACAAC
GTCTCGCCGAACTGGACAATGCAATCAACGCCCGCGCCGACTACTACGAGAAACGTGAACAGGACCCCGGCTTCAGCGGT
TTCCATCGCATTGAATACGGCCTGTTCGAGCAACACAGCGTCGAGGGCCTGACGCCGGTCGCGCAGCGTCTGCAAACCGA
TGTCACCCAGCTCAAGCAACAGTTGCTGGCGCAATCGCTGGCGCCCGAGCAATTGGCGGCCATCGCCACCCGCACACTGC
GCAGCCTGGCTGAGGTACGCAGCAACGGCGAAGAGGAACGCTACAGCCACAGCGACCTCAACGGCTTTGCTGCCAACCTG
GACGGCACCCGCAAGATCGTCGACCTGCTGCGTCCGTTGCTGGCCCGCAGTGCGGGCGATCTGTTGCAGAAGATCGACGC
GGCCATGGCCGATCTGGACACCACGCTCGATGCGTTGAGCAGCGCCGATGGTGGCGTGCGCCCCTACGATCAGGTGGATG
AGGCGCAGCGTCAGCAGATCGCCGCCAAGGCTGGCGCTCTGGCTGACGCGCTCAATGGCATCGACCCGGCACTCGGCCTC
TCCGGCCTCTGA

Upstream 100 bases:

>100_bases
TGATCGGGGCGCTGCTGCTGTTCTTCAAGCCGCACACCCCGACCGCTGGCAAGGTCATGCAGCCAAACACCTCTTCTGTT
ACGAACGAATAAGGGCCTCC

Downstream 100 bases:

>100_bases
TTTACTGGAGCACAGCACGATGAAAAATCCGGACAGCAATCCAGACACAAGCAACGCTCCGGCCTCCCTGCAACGCCGCC
GCGTGCTGATGGGGCTTGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 402

Protein sequence:

>403_residues
MSNRPSGPSGKARPPRVLRLAVAGSVILMIAAGGLFYYASQVAAKKRAANAGTETVVNIHAHNCEPNALTVAAGNNAFRI
VNRSERAVEWEILDGVLVIEERENIAPGLSQVINANLAPGDYTITCGLLSNPRGTLHVTPTAESDAKAKARPSMTAFIGP
LSEYRVYLSLQSSALIKAVTALQQAIDAGDLSAAQAAYLPARAAYQRIAPAAQRLAELDNAINARADYYEKREQDPGFSG
FHRIEYGLFEQHSVEGLTPVAQRLQTDVTQLKQQLLAQSLAPEQLAAIATRTLRSLAEVRSNGEEERYSHSDLNGFAANL
DGTRKIVDLLRPLLARSAGDLLQKIDAAMADLDTTLDALSSADGGVRPYDQVDEAQRQQIAAKAGALADALNGIDPALGL
SGL

Sequences:

>Translated_403_residues
MSNRPSGPSGKARPPRVLRLAVAGSVILMIAAGGLFYYASQVAAKKRAANAGTETVVNIHAHNCEPNALTVAAGNNAFRI
VNRSERAVEWEILDGVLVIEERENIAPGLSQVINANLAPGDYTITCGLLSNPRGTLHVTPTAESDAKAKARPSMTAFIGP
LSEYRVYLSLQSSALIKAVTALQQAIDAGDLSAAQAAYLPARAAYQRIAPAAQRLAELDNAINARADYYEKREQDPGFSG
FHRIEYGLFEQHSVEGLTPVAQRLQTDVTQLKQQLLAQSLAPEQLAAIATRTLRSLAEVRSNGEEERYSHSDLNGFAANL
DGTRKIVDLLRPLLARSAGDLLQKIDAAMADLDTTLDALSSADGGVRPYDQVDEAQRQQIAAKAGALADALNGIDPALGL
SGL
>Mature_402_residues
SNRPSGPSGKARPPRVLRLAVAGSVILMIAAGGLFYYASQVAAKKRAANAGTETVVNIHAHNCEPNALTVAAGNNAFRIV
NRSERAVEWEILDGVLVIEERENIAPGLSQVINANLAPGDYTITCGLLSNPRGTLHVTPTAESDAKAKARPSMTAFIGPL
SEYRVYLSLQSSALIKAVTALQQAIDAGDLSAAQAAYLPARAAYQRIAPAAQRLAELDNAINARADYYEKREQDPGFSGF
HRIEYGLFEQHSVEGLTPVAQRLQTDVTQLKQQLLAQSLAPEQLAAIATRTLRSLAEVRSNGEEERYSHSDLNGFAANLD
GTRKIVDLLRPLLARSAGDLLQKIDAAMADLDTTLDALSSADGGVRPYDQVDEAQRQQIAAKAGALADALNGIDPALGLS
GL

Specific function: Unknown

COG id: COG2822

COG function: function code P; Predicted periplasmic lipoprotein involved in iron transport

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0409 family [H]

Homologues:

Organism=Escherichia coli, GI1787254, Length=344, Percent_Identity=41.2790697674419, Blast_Score=281, Evalue=5e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008972
- InterPro:   IPR018976 [H]

Pfam domain/function: PF09375 Peptidase_M75 [H]

EC number: NA

Molecular weight: Translated: 42898; Mature: 42767

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNRPSGPSGKARPPRVLRLAVAGSVILMIAAGGLFYYASQVAAKKRAANAGTETVVNIH
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEE
AHNCEPNALTVAAGNNAFRIVNRSERAVEWEILDGVLVIEERENIAPGLSQVINANLAPG
ECCCCCCEEEEEECCCEEEEECCCCCEEEEEECCCEEEEECCCCCCHHHHHHHCCCCCCC
DYTITCGLLSNPRGTLHVTPTAESDAKAKARPSMTAFIGPLSEYRVYLSLQSSALIKAVT
CEEEEEEEECCCCCEEEECCCCCCCCCHHCCCCHHHHHCCHHHEEEEEEECHHHHHHHHH
ALQQAIDAGDLSAAQAAYLPARAAYQRIAPAAQRLAELDNAINARADYYEKREQDPGFSG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FHRIEYGLFEQHSVEGLTPVAQRLQTDVTQLKQQLLAQSLAPEQLAAIATRTLRSLAEVR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SNGEEERYSHSDLNGFAANLDGTRKIVDLLRPLLARSAGDLLQKIDAAMADLDTTLDALS
CCCCHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SADGGVRPYDQVDEAQRQQIAAKAGALADALNGIDPALGLSGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SNRPSGPSGKARPPRVLRLAVAGSVILMIAAGGLFYYASQVAAKKRAANAGTETVVNIH
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCEEEEEE
AHNCEPNALTVAAGNNAFRIVNRSERAVEWEILDGVLVIEERENIAPGLSQVINANLAPG
ECCCCCCEEEEEECCCEEEEECCCCCEEEEEECCCEEEEECCCCCCHHHHHHHCCCCCCC
DYTITCGLLSNPRGTLHVTPTAESDAKAKARPSMTAFIGPLSEYRVYLSLQSSALIKAVT
CEEEEEEEECCCCCEEEECCCCCCCCCHHCCCCHHHHHCCHHHEEEEEEECHHHHHHHHH
ALQQAIDAGDLSAAQAAYLPARAAYQRIAPAAQRLAELDNAINARADYYEKREQDPGFSG
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FHRIEYGLFEQHSVEGLTPVAQRLQTDVTQLKQQLLAQSLAPEQLAAIATRTLRSLAEVR
HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
SNGEEERYSHSDLNGFAANLDGTRKIVDLLRPLLARSAGDLLQKIDAAMADLDTTLDALS
CCCCHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SADGGVRPYDQVDEAQRQQIAAKAGALADALNGIDPALGLSGL
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA