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The map label for this gene is ycdB [H]

Identifier: 66046598

GI number: 66046598

Start: 4027962

End: 4029284

Strand: Direct

Name: ycdB [H]

Synonym: Psyr_3369

Alternate gene names: 66046598

Gene position: 4027962-4029284 (Clockwise)

Preceding gene: 66046597

Following gene: 66046599

Centisome position: 66.1

GC content: 63.19

Gene sequence:

>1323_bases
ATGAAAAATCCGGACAGCAATCCAGACACAAGCAACGCTCCGGCCTCCCTGCAACGCCGCCGCGTGCTGATGGGGCTTGG
CGCTGCAGGGGCCGCGCTGGCTGGCAGCAGCCTGAGCGGCAACGTACTTGCCGCAGCGCCTGCACAAGTCGCCGAAGCGC
CAAACAGTGAAAAAACGCAGGATCACAACGAGTTTTACGGTCAGCACCAGAGCGGCATCGTCAACCCGCGCCCGGCCGCG
GGCATGCTGGTGGCGTTCGATGTTCTGGCCGCCGACCGTGAGGACCTGGAACGCCTGTTTCGCACGCTGAACGAGCGCAT
CGCGTTCCTGATGACCGGTGGCCCGGTGCCGGAGATCGATCCGAAACTGCCACCGCCGGACTCGGGCATTCTCGGCCCGG
TGGTGACCCCGGACAACCTGACCATCACCGTGTCGGTGGGCGAGTCGCTGTTCGATGAGCGTTTCGGCCTGGCCCCGATC
AAGCCGAAACGCCTGAGCCGGATGACCGGTTTCCCCAACGATGCGCTGGATCCGGCCAGTTGCCACGGCGATCTGAGCAT
CCAGTTCTGCGCCAACACCGCCGACAGCAACATCCATGCGCTGCGCGACATCGTCAAGAACCTGCCCGATCTGCTGCTGG
TGCGCTGGAAACAGGAAGGCACCGTGCCGCCCCAGGCACCGAAGAAACCCGGTCAGCCACCAGAAAGCGCGCGCAACTTC
CTGGGTTTCCGGGATGGTTCGGCGAACCCGGATTCCAACAACCAGAAGACCATGAACGAGCTGGTCTGGGTGCAACCGGG
CAGCGACGAACCGGCCTGGGCCGCCAATGGCAGCTATCAGGCGGTGCGCATCATCCGCAACTTCGTCGAGCGTTGGGACC
GCACGCCGTTGCAGGAGCAGGAATCGATTTTCGGTCGCAGCAAAAGCACCGGCGCGCCCATGGACGGCAAGGTCGAGAGC
GATGTGCCCAACTACGCGGCAGACCCGGAAGGCAAGAAAACCCGGCTGGATTCGCACATCCGCCTGGCCAACCCGCGTAC
CGCCGAAAGCCAGCGCAACCTGATCCTGCGTCGTCCGTTCAATTACTCCAACGGGGTGAACAAGAACGGGCAACTGGACA
TGGGCCTGCTGTTCATCTGCTACCAGGCCGATCTGGAAAAGGGCTTCATTACGGTACAGAGCCGGCTTAACGGCGAGCCG
CTGGAGGAATACCTCAAACCGGTCGGTGGCGGCTATTTCTTCACCCTGCCGGGGGTAACCGGCGACCAGGATTTCATCGG
TCGCTCGCTGCTGGCGGCCGTAGCGCCCACTAAAAACGCATGA

Upstream 100 bases:

>100_bases
CAGCAGATCGCCGCCAAGGCTGGCGCTCTGGCTGACGCGCTCAATGGCATCGACCCGGCACTCGGCCTCTCCGGCCTCTG
ATTTACTGGAGCACAGCACG

Downstream 100 bases:

>100_bases
CCTATCCACTCCTGACCCGGAAGACACTCATGAAAAAGACGCCCCTGGCTTTGCTCCTGACCCTTGGCCTGCTCCAGACC
CCACTGGCGGCCTTTGCCGC

Product: twin-arginine translocation pathway signal:Tat-translocated enzyme:Dyp-type peroxidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MKNPDSNPDTSNAPASLQRRRVLMGLGAAGAALAGSSLSGNVLAAAPAQVAEAPNSEKTQDHNEFYGQHQSGIVNPRPAA
GMLVAFDVLAADREDLERLFRTLNERIAFLMTGGPVPEIDPKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAPI
KPKRLSRMTGFPNDALDPASCHGDLSIQFCANTADSNIHALRDIVKNLPDLLLVRWKQEGTVPPQAPKKPGQPPESARNF
LGFRDGSANPDSNNQKTMNELVWVQPGSDEPAWAANGSYQAVRIIRNFVERWDRTPLQEQESIFGRSKSTGAPMDGKVES
DVPNYAADPEGKKTRLDSHIRLANPRTAESQRNLILRRPFNYSNGVNKNGQLDMGLLFICYQADLEKGFITVQSRLNGEP
LEEYLKPVGGGYFFTLPGVTGDQDFIGRSLLAAVAPTKNA

Sequences:

>Translated_440_residues
MKNPDSNPDTSNAPASLQRRRVLMGLGAAGAALAGSSLSGNVLAAAPAQVAEAPNSEKTQDHNEFYGQHQSGIVNPRPAA
GMLVAFDVLAADREDLERLFRTLNERIAFLMTGGPVPEIDPKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAPI
KPKRLSRMTGFPNDALDPASCHGDLSIQFCANTADSNIHALRDIVKNLPDLLLVRWKQEGTVPPQAPKKPGQPPESARNF
LGFRDGSANPDSNNQKTMNELVWVQPGSDEPAWAANGSYQAVRIIRNFVERWDRTPLQEQESIFGRSKSTGAPMDGKVES
DVPNYAADPEGKKTRLDSHIRLANPRTAESQRNLILRRPFNYSNGVNKNGQLDMGLLFICYQADLEKGFITVQSRLNGEP
LEEYLKPVGGGYFFTLPGVTGDQDFIGRSLLAAVAPTKNA
>Mature_440_residues
MKNPDSNPDTSNAPASLQRRRVLMGLGAAGAALAGSSLSGNVLAAAPAQVAEAPNSEKTQDHNEFYGQHQSGIVNPRPAA
GMLVAFDVLAADREDLERLFRTLNERIAFLMTGGPVPEIDPKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAPI
KPKRLSRMTGFPNDALDPASCHGDLSIQFCANTADSNIHALRDIVKNLPDLLLVRWKQEGTVPPQAPKKPGQPPESARNF
LGFRDGSANPDSNNQKTMNELVWVQPGSDEPAWAANGSYQAVRIIRNFVERWDRTPLQEQESIFGRSKSTGAPMDGKVES
DVPNYAADPEGKKTRLDSHIRLANPRTAESQRNLILRRPFNYSNGVNKNGQLDMGLLFICYQADLEKGFITVQSRLNGEP
LEEYLKPVGGGYFFTLPGVTGDQDFIGRSLLAAVAPTKNA

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=417, Percent_Identity=60.1918465227818, Blast_Score=510, Evalue=1e-146,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 47700; Mature: 47700

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNPDSNPDTSNAPASLQRRRVLMGLGAAGAALAGSSLSGNVLAAAPAQVAEAPNSEKTQ
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCHHHHCCCCCCCCC
DHNEFYGQHQSGIVNPRPAAGMLVAFDVLAADREDLERLFRTLNERIAFLMTGGPVPEID
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCCCC
PKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAPIKPKRLSRMTGFPNDALDPAS
CCCCCCCCCCCCCEECCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
CHGDLSIQFCANTADSNIHALRDIVKNLPDLLLVRWKQEGTVPPQAPKKPGQPPESARNF
CCCCEEEEEECCCCCCHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LGFRDGSANPDSNNQKTMNELVWVQPGSDEPAWAANGSYQAVRIIRNFVERWDRTPLQEQ
CCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ESIFGRSKSTGAPMDGKVESDVPNYAADPEGKKTRLDSHIRLANPRTAESQRNLILRRPF
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHCCEEEECCC
NYSNGVNKNGQLDMGLLFICYQADLEKGFITVQSRLNGEPLEEYLKPVGGGYFFTLPGVT
CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCCCC
GDQDFIGRSLLAAVAPTKNA
CCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKNPDSNPDTSNAPASLQRRRVLMGLGAAGAALAGSSLSGNVLAAAPAQVAEAPNSEKTQ
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCEEEECCHHHHCCCCCCCCC
DHNEFYGQHQSGIVNPRPAAGMLVAFDVLAADREDLERLFRTLNERIAFLMTGGPVPEID
HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEECCCCCCCCC
PKLPPPDSGILGPVVTPDNLTITVSVGESLFDERFGLAPIKPKRLSRMTGFPNDALDPAS
CCCCCCCCCCCCCEECCCCEEEEEECCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCC
CHGDLSIQFCANTADSNIHALRDIVKNLPDLLLVRWKQEGTVPPQAPKKPGQPPESARNF
CCCCEEEEEECCCCCCHHHHHHHHHHHCHHHEEEEECCCCCCCCCCCCCCCCCHHHHHHH
LGFRDGSANPDSNNQKTMNELVWVQPGSDEPAWAANGSYQAVRIIRNFVERWDRTPLQEQ
CCCCCCCCCCCCCCHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHH
ESIFGRSKSTGAPMDGKVESDVPNYAADPEGKKTRLDSHIRLANPRTAESQRNLILRRPF
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCHHHCCEEEECCC
NYSNGVNKNGQLDMGLLFICYQADLEKGFITVQSRLNGEPLEEYLKPVGGGYFFTLPGVT
CCCCCCCCCCCCCCEEEEEEEECCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEECCCCC
GDQDFIGRSLLAAVAPTKNA
CCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]