| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is gsiB [H]
Identifier: 66045507
GI number: 66045507
Start: 2632280
End: 2633800
Strand: Reverse
Name: gsiB [H]
Synonym: Psyr_2267
Alternate gene names: 66045507
Gene position: 2633800-2632280 (Counterclockwise)
Preceding gene: 66045512
Following gene: 66045506
Centisome position: 43.22
GC content: 60.49
Gene sequence:
>1521_bases ATGGGAATCAAGGGTTTCGCTCGCAGCATCGCGCTATTGAGCCTGTTCAGCAGTTTCTCCGTCCTGGCCGGCAAGGCTGA CGACACACTGGTCTACGCCTCCGACAGCGAACCGGAAAACATCAGCCCCTATCACAACGACTTGCGCGAAGGCGTGATCC TCGGTCGCCTGATCTGGGACAACCTGGTCTATCGCAACCCGGACAATGGCGAGTACCAACCGATGCTCGCCACCAGCTGG AAACAGGTCGACGATACGACCATCGACTTCCAGCTGCGCCAGGGCGTGAAGTTTCACAACGGCGACCCGTTCACTGCAGA TGACGTGGTGTTCACCCTCAATTATGTGGTGTCTCCCGAGTCCAAGGTGGTCACCGTCCAAAACGTCGACTGGATCAAGA GCGCCGAAAAACTGGGCGATTACAGTGTTCGTCTGCACCTGAAAAAGCCCTTCCCGCCTGCGCTGGAATACCTCTCCAAC GCCGTACCGATGTTTCCGAAAAAATATTTCGAAGAAGTCGGGCTGGCAGGCTTCAGCCGTAAACCGATCGGCACCGGGCC TTACAAGGTGACGGCCATCGCCACCGGCGAAGGCGTGAAAATGGACAAGAACCCGGACTACTTCAAGGACAGCCCGCAAG GTCAGCCAAAGATCGGGCACATCAACTTTCGGGTGATCGCCGATGCCGAAACGCGCCTGGCCGAGCTGATGACCGGTGGC GTCGACTGGACCTGGCGGGTGGCGCCGGATCAGGCGGAAAACCTCAAGGCCATGCCCAACCTGGTGGTCACCAGCGGTGC GACCATGCGCATCGGCTTTCTGATTCTCGACGCGCGCGGCACCTCCAGCGCCGATTCGCCGATGAAGCACCTGAAAGTAC GTCAGGCGATCAACTACGCGATCAATCGGGACGGGCTGGCTTCGCAACTGGTCGGCGGCGAAAGCAAGCCGTTGCAAGTC GCCTGCTACCCTGGCCAGTTCGGTTGTGACACCACCGCCGCCACGGTCTACAACTACGACCCGGCAAAGGCCAAGGCGCT GCTCGCCGAAGCCGGCTACCCGAACGGCTTTGAAACCGAAATCTTCGCTTACCGCGACCGCGACTACGTTGAAGCCATCA TCGGCAACCTGCGCGCCGTGGGCATCAACGCCAAGCTGCGCTACCTGAAATACGCCGCCCTGCGTGATCAGCAGCGCGGC GGCAAGGTACCGATGTCGTTCCAGGCGTGGGGATCGTTCTCGATCCTCGACACCTCGGCGTCGGCCGGCACCTGGTTCAA GGGCAACCCCGACGACAACATCAAGGACCCGCAAGTCCAGGGCTGGCTGCAGACCGCCGACAACGCGCTGGACCCGCAGG TGCGCAAGGACAACTACCGCAAGGCGTTGCAGCGCATCAGCGAGCAGGCCTACTGGGCGCCGCTGTTCAACTACTCGATG AACTACGCCTATGTCTCGGACCTGAACTTCAAGCCTTACCCGGACGAGCTGCCGCGCTTCGTACTGTCGAGCTGGAAATA A
Upstream 100 bases:
>100_bases ACCCAATCAAAAGAACACTGCGGCCTTGTTGCTTCTTCCTTCTCGCATTTGCGACCCACTGCCCTTTGATACATCCACTT TGCCTTTTGGAGACGACGGC
Downstream 100 bases:
>100_bases GCACTTGCCCAAGCCAGTCGGCCAGCCTGGCTGTAAGGCGCATGCCGCGCCTTGCAGCAGGGTCAGCCACGCCGTCATTC CCTGAACACAAGGTCACTTG
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 506; Mature: 505
Protein sequence:
>506_residues MGIKGFARSIALLSLFSSFSVLAGKADDTLVYASDSEPENISPYHNDLREGVILGRLIWDNLVYRNPDNGEYQPMLATSW KQVDDTTIDFQLRQGVKFHNGDPFTADDVVFTLNYVVSPESKVVTVQNVDWIKSAEKLGDYSVRLHLKKPFPPALEYLSN AVPMFPKKYFEEVGLAGFSRKPIGTGPYKVTAIATGEGVKMDKNPDYFKDSPQGQPKIGHINFRVIADAETRLAELMTGG VDWTWRVAPDQAENLKAMPNLVVTSGATMRIGFLILDARGTSSADSPMKHLKVRQAINYAINRDGLASQLVGGESKPLQV ACYPGQFGCDTTAATVYNYDPAKAKALLAEAGYPNGFETEIFAYRDRDYVEAIIGNLRAVGINAKLRYLKYAALRDQQRG GKVPMSFQAWGSFSILDTSASAGTWFKGNPDDNIKDPQVQGWLQTADNALDPQVRKDNYRKALQRISEQAYWAPLFNYSM NYAYVSDLNFKPYPDELPRFVLSSWK
Sequences:
>Translated_506_residues MGIKGFARSIALLSLFSSFSVLAGKADDTLVYASDSEPENISPYHNDLREGVILGRLIWDNLVYRNPDNGEYQPMLATSW KQVDDTTIDFQLRQGVKFHNGDPFTADDVVFTLNYVVSPESKVVTVQNVDWIKSAEKLGDYSVRLHLKKPFPPALEYLSN AVPMFPKKYFEEVGLAGFSRKPIGTGPYKVTAIATGEGVKMDKNPDYFKDSPQGQPKIGHINFRVIADAETRLAELMTGG VDWTWRVAPDQAENLKAMPNLVVTSGATMRIGFLILDARGTSSADSPMKHLKVRQAINYAINRDGLASQLVGGESKPLQV ACYPGQFGCDTTAATVYNYDPAKAKALLAEAGYPNGFETEIFAYRDRDYVEAIIGNLRAVGINAKLRYLKYAALRDQQRG GKVPMSFQAWGSFSILDTSASAGTWFKGNPDDNIKDPQVQGWLQTADNALDPQVRKDNYRKALQRISEQAYWAPLFNYSM NYAYVSDLNFKPYPDELPRFVLSSWK >Mature_505_residues GIKGFARSIALLSLFSSFSVLAGKADDTLVYASDSEPENISPYHNDLREGVILGRLIWDNLVYRNPDNGEYQPMLATSWK QVDDTTIDFQLRQGVKFHNGDPFTADDVVFTLNYVVSPESKVVTVQNVDWIKSAEKLGDYSVRLHLKKPFPPALEYLSNA VPMFPKKYFEEVGLAGFSRKPIGTGPYKVTAIATGEGVKMDKNPDYFKDSPQGQPKIGHINFRVIADAETRLAELMTGGV DWTWRVAPDQAENLKAMPNLVVTSGATMRIGFLILDARGTSSADSPMKHLKVRQAINYAINRDGLASQLVGGESKPLQVA CYPGQFGCDTTAATVYNYDPAKAKALLAEAGYPNGFETEIFAYRDRDYVEAIIGNLRAVGINAKLRYLKYAALRDQQRGG KVPMSFQAWGSFSILDTSASAGTWFKGNPDDNIKDPQVQGWLQTADNALDPQVRKDNYRKALQRISEQAYWAPLFNYSMN YAYVSDLNFKPYPDELPRFVLSSWK
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import [H]
COG id: COG0747
COG function: function code E; ABC-type dipeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI1787052, Length=444, Percent_Identity=26.5765765765766, Blast_Score=125, Evalue=5e-30, Organism=Escherichia coli, GI1789966, Length=440, Percent_Identity=26.1363636363636, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1789887, Length=525, Percent_Identity=24.7619047619048, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI1787762, Length=500, Percent_Identity=23.8, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI1787551, Length=388, Percent_Identity=25.5154639175258, Blast_Score=102, Evalue=5e-23, Organism=Escherichia coli, GI87082063, Length=157, Percent_Identity=27.3885350318471, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 56367; Mature: 56236
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIKGFARSIALLSLFSSFSVLAGKADDTLVYASDSEPENISPYHNDLREGVILGRLIWD CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH NLVYRNPDNGEYQPMLATSWKQVDDTTIDFQLRQGVKFHNGDPFTADDVVFTLNYVVSPE HHEEECCCCCCCCCHHHCCCHHCCCCEEEEEECCCCEECCCCCCCCCCEEEEEEEEECCC SKVVTVQNVDWIKSAEKLGDYSVRLHLKKPFPPALEYLSNAVPMFPKKYFEEVGLAGFSR CCEEEEECCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCC KPIGTGPYKVTAIATGEGVKMDKNPDYFKDSPQGQPKIGHINFRVIADAETRLAELMTGG CCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCC VDWTWRVAPDQAENLKAMPNLVVTSGATMRIGFLILDARGTSSADSPMKHLKVRQAINYA CCEEEEECCCHHHCHHHCCCEEEECCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH INRDGLASQLVGGESKPLQVACYPGQFGCDTTAATVYNYDPAKAKALLAEAGYPNGFETE CCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCE IFAYRDRDYVEAIIGNLRAVGINAKLRYLKYAALRDQQRGGKVPMSFQAWGSFSILDTSA EEEECCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCC SAGTWFKGNPDDNIKDPQVQGWLQTADNALDPQVRKDNYRKALQRISEQAYWAPLFNYSM CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHHCCC NYAYVSDLNFKPYPDELPRFVLSSWK CEEEEECCCCCCCCHHHHHHHHHCCC >Mature Secondary Structure GIKGFARSIALLSLFSSFSVLAGKADDTLVYASDSEPENISPYHNDLREGVILGRLIWD CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH NLVYRNPDNGEYQPMLATSWKQVDDTTIDFQLRQGVKFHNGDPFTADDVVFTLNYVVSPE HHEEECCCCCCCCCHHHCCCHHCCCCEEEEEECCCCEECCCCCCCCCCEEEEEEEEECCC SKVVTVQNVDWIKSAEKLGDYSVRLHLKKPFPPALEYLSNAVPMFPKKYFEEVGLAGFSR CCEEEEECCHHHHHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHCCCCCCC KPIGTGPYKVTAIATGEGVKMDKNPDYFKDSPQGQPKIGHINFRVIADAETRLAELMTGG CCCCCCCEEEEEEECCCCEEECCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCC VDWTWRVAPDQAENLKAMPNLVVTSGATMRIGFLILDARGTSSADSPMKHLKVRQAINYA CCEEEEECCCHHHCHHHCCCEEEECCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHH INRDGLASQLVGGESKPLQVACYPGQFGCDTTAATVYNYDPAKAKALLAEAGYPNGFETE CCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCE IFAYRDRDYVEAIIGNLRAVGINAKLRYLKYAALRDQQRGGKVPMSFQAWGSFSILDTSA EEEECCHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCC SAGTWFKGNPDDNIKDPQVQGWLQTADNALDPQVRKDNYRKALQRISEQAYWAPLFNYSM CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHEEEHHHCCC NYAYVSDLNFKPYPDELPRFVLSSWK CEEEEECCCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA