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The map label for this gene is ycjC [C]

Identifier: 66045512

GI number: 66045512

Start: 2637923

End: 2638528

Strand: Reverse

Name: ycjC [C]

Synonym: Psyr_2272

Alternate gene names: 66045512

Gene position: 2638528-2637923 (Counterclockwise)

Preceding gene: 66045518

Following gene: 66045507

Centisome position: 43.3

GC content: 59.9

Gene sequence:

>606_bases
ATGAACATGCCGACCGAACCGCATCCGAAATTGAAGCTCGAGCAGTACCTGGGCATTCAGATCAAGCGTCAGCGCCAGGC
TCAGGAACTGAAGCTCGCCGATGTGGCGCGCATCGCTGGTATCAGCCAGGGCATGCTGAGCAAGATCGAGAACGCGCAGG
TCTCGACCAGCCTCGACAACCTCAGCCGCCTGTGCGACGTGCTGGGCATGCCCATGTCCAAACTGTTCAGCCAGTACGAC
CAGCAAGGCAGCAGTGCCCTGCTGGTGAAGGCCGATGAAGGACTCGAAGTGGTGAGGCGCGGCACCGAGAAAGGCCACAC
CTATCACCTGCTCAACCATACCCGTGGGCCGAAGAAGAGTTTCGAGGCGTACATGGTGACGATGGACGATGCCAGCGAAG
AGTTTCCGACCTTTTCACACCCCGGCACGGAGTTTCTGCACCTGCTGGAAGGCGAACTGATCTACCGCCACGGCAACCAG
CTGTATCCGATGCAGGCCGGTGACAGCCTGACCTTCGACGGCGACATCCCCCATGGCCCCGAGCAACTGGTGCAGGTGCC
GATCAAACTGCTGTCGATCATGAATTACGGGGCGCACGGAGACTGA

Upstream 100 bases:

>100_bases
CCCTCTGGGAATAATCTGCAACCCGGCCACACCATGGCCTGGCGGAACGCACATTCCCAGTGCGAAATAAAAATTATTGA
ACGGAAACCGTGCAAAGCCT

Downstream 100 bases:

>100_bases
CGCCAGGCGAGAAGCGGTACGCCAGCAGGCGCACCGCTGTTGCCGGGACTAGAAGTACTTCAGCCAGCTGATATCCCGAC
GCCGGGCCTTGAGCGCGGCG

Product: helix-hairpin-helix DNA-binding motif-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator; XRE Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; Cro/CI Family Transcriptional Regulator; HTH-Type Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Domain Protein; Transcriptional Regulator Protein; Transcriptional Regulator MerR Family; Cupin Domain Protein; Transcriptional Regulatory Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Cupin 2 Domain-Containing Protein; Helix-Turn-Helix Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Protein LacI Family

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCDVLGMPMSKLFSQYD
QQGSSALLVKADEGLEVVRRGTEKGHTYHLLNHTRGPKKSFEAYMVTMDDASEEFPTFSHPGTEFLHLLEGELIYRHGNQ
LYPMQAGDSLTFDGDIPHGPEQLVQVPIKLLSIMNYGAHGD

Sequences:

>Translated_201_residues
MNMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCDVLGMPMSKLFSQYD
QQGSSALLVKADEGLEVVRRGTEKGHTYHLLNHTRGPKKSFEAYMVTMDDASEEFPTFSHPGTEFLHLLEGELIYRHGNQ
LYPMQAGDSLTFDGDIPHGPEQLVQVPIKLLSIMNYGAHGD
>Mature_201_residues
MNMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDNLSRLCDVLGMPMSKLFSQYD
QQGSSALLVKADEGLEVVRRGTEKGHTYHLLNHTRGPKKSFEAYMVTMDDASEEFPTFSHPGTEFLHLLEGELIYRHGNQ
LYPMQAGDSLTFDGDIPHGPEQLVQVPIKLLSIMNYGAHGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787557, Length=161, Percent_Identity=25.4658385093168, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22462; Mature: 22462

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDN
CCCCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHH
LSRLCDVLGMPMSKLFSQYDQQGSSALLVKADEGLEVVRRGTEKGHTYHLLNHTRGPKKS
HHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCCCCCCC
FEAYMVTMDDASEEFPTFSHPGTEFLHLLEGELIYRHGNQLYPMQAGDSLTFDGDIPHGP
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEECCCEEEEECCCCCEEECCCCCCCH
EQLVQVPIKLLSIMNYGAHGD
HHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNMPTEPHPKLKLEQYLGIQIKRQRQAQELKLADVARIAGISQGMLSKIENAQVSTSLDN
CCCCCCCCCCEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHH
LSRLCDVLGMPMSKLFSQYDQQGSSALLVKADEGLEVVRRGTEKGHTYHLLNHTRGPKKS
HHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCCCHHHHHCCCCCCCEEEECCCCCCCCCC
FEAYMVTMDDASEEFPTFSHPGTEFLHLLEGELIYRHGNQLYPMQAGDSLTFDGDIPHGP
CEEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEECCCEEEEECCCCCEEECCCCCCCH
EQLVQVPIKLLSIMNYGAHGD
HHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA