BacMap

Definition	Pseudomonas syringae pv. syringae B728a, complete genome.
Accession	NC_007005
Length	6,093,698

Click here to switch to the map view.

The map label for this gene is dgoT [H]

Identifier: 66045230

GI number: 66045230

Start: 2310588

End: 2311898

Strand: Direct

Name: dgoT [H]

Synonym: Psyr_1990

Alternate gene names: 66045230

Gene position: 2310588-2311898 (Clockwise)

Preceding gene: 66045229

Following gene: 66045231

Centisome position: 37.92

GC content: 61.86

Gene sequence:

>1311_bases
ATGCGCACTCGAACTATGGAAGGCGCGGCGTCGCTGGTGACGCCGTCCCGCAAACGTTTCTTTATCATGGTGCTGCTGTT
CATCACCGTAGTGATCAACTACCTGGACCGCAGCAACCTGTCGATTGCCGCACCAGCGCTGACCTCCGAACTGGGCCTTG
ACCCGGTGCATGTCGGGCTGATCTTTTCCGCGTTCGGCTGGACCTACGCCGCCATGCAGCTGCCCGGGGGCTGGCTGGTG
GACCGCGTGCCGCCGCGCATTCTCTACACCGCAGCCCTGCTGCTGTGGTCCATCGCGACCATCATGCTCGGCTTCGCCGC
CAGCTTCATCGCCCTGTTCGTACTGCGCATGGCGGTCGGTGCGCTGGAAGCACCTGCTTATCCGATCAACAGCCGCGTGG
TCACCACCTGGTTTCCCGAGCGCGAGCGGGCCACTGCCATCGGCGTCTATACCTCCGGACAGTTCGTCGGTCTGGCGTTT
CTGACCCCGGTGCTGGCCTGGCTGCAGGCGCACTACGGCTGGCACATGGTGTTTGTCGCTACCGGTGGAGTCGGCGTGTT
GTGGGCGTTGATCTGGTACACGGTGTATCGCGAGCCACGTGATTTCAACGGCGTCAATCAGCAGGAAATCGAACTGATCC
AGGAGGGCGGCGGGCTGGTGGACATCCAGAAGGACGTCGAAAAACAGAAGCAGGCGTTCAGCTGGCTGGACCTGGGTATT
GTGTTGAGCAAGCGCAAGCTGTGGGGCATCTACCTGGGGCAATTCTGCCTGAACTCCACGCTGTGGTTTTTCCTGACCTG
GTTCCCGACCTACCTGGTGAAATACCGGGGCATGGACTTCATCAAATCGGGCCTGCTGGCGTCGTTGCCGTTCCTCGCCG
CGTTTGTCGGTGTGCTGTGCTCGGGCTTCTTCTCCGACTGGCTGATCCGCCGCGGGCATAGCGTAGGCTTTGCACGCAAG
TTGCCGATCATTGCCGGGCTGCTGATCTCGACCTCGATCATCGGTGCCAACTTCGTCGACTCCACGCCGCTGGTGATCAC
CTTTCTGGCGCTGGCGTTCTTCGGCAACGGTCTGGCGTCGATCACCTGGTCGCTGGTCTCGACCCTGGCGCCAGCGCGCC
TGCTGGGCCTGACCGGTGGCACGTTCAACTTCATCGGCAACCTCTCTGCCATCGCCACCCCGATCGTGATCGGCTTTCTG
GCGTCGGGAGACTCGTTTGCGCCTGCCATTACCTACATATCGGTCCTGGCACTGCTGGGCGCGCTGTCTTACATCCTGCT
GGTAGGGAAGGTGGAGCGTATCGAGCTCTGA

Upstream 100 bases:

>100_bases
ATAACGATGAGCGCTCTGCGTGGGAACGAGAATCGGCGTGCCTTCAGCTCGGTTATATCGAAATACAGACCTCAATAAAT
CCAACAAGAGGCTACATTCC

Downstream 100 bases:

>100_bases
TGTCGACGCGTCTGGACACTGGCGGTGATAATGCCGCCCGTTTTCGATCCGAACCCTTTTGATCCGAGCAAGGTTTTTCA
TGCATAACGATTCGATCACT

Product: D-galactonate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MRTRTMEGAASLVTPSRKRFFIMVLLFITVVINYLDRSNLSIAAPALTSELGLDPVHVGLIFSAFGWTYAAMQLPGGWLV
DRVPPRILYTAALLLWSIATIMLGFAASFIALFVLRMAVGALEAPAYPINSRVVTTWFPERERATAIGVYTSGQFVGLAF
LTPVLAWLQAHYGWHMVFVATGGVGVLWALIWYTVYREPRDFNGVNQQEIELIQEGGGLVDIQKDVEKQKQAFSWLDLGI
VLSKRKLWGIYLGQFCLNSTLWFFLTWFPTYLVKYRGMDFIKSGLLASLPFLAAFVGVLCSGFFSDWLIRRGHSVGFARK
LPIIAGLLISTSIIGANFVDSTPLVITFLALAFFGNGLASITWSLVSTLAPARLLGLTGGTFNFIGNLSAIATPIVIGFL
ASGDSFAPAITYISVLALLGALSYILLVGKVERIEL

Sequences:

>Translated_436_residues
MRTRTMEGAASLVTPSRKRFFIMVLLFITVVINYLDRSNLSIAAPALTSELGLDPVHVGLIFSAFGWTYAAMQLPGGWLV
DRVPPRILYTAALLLWSIATIMLGFAASFIALFVLRMAVGALEAPAYPINSRVVTTWFPERERATAIGVYTSGQFVGLAF
LTPVLAWLQAHYGWHMVFVATGGVGVLWALIWYTVYREPRDFNGVNQQEIELIQEGGGLVDIQKDVEKQKQAFSWLDLGI
VLSKRKLWGIYLGQFCLNSTLWFFLTWFPTYLVKYRGMDFIKSGLLASLPFLAAFVGVLCSGFFSDWLIRRGHSVGFARK
LPIIAGLLISTSIIGANFVDSTPLVITFLALAFFGNGLASITWSLVSTLAPARLLGLTGGTFNFIGNLSAIATPIVIGFL
ASGDSFAPAITYISVLALLGALSYILLVGKVERIEL
>Mature_436_residues
MRTRTMEGAASLVTPSRKRFFIMVLLFITVVINYLDRSNLSIAAPALTSELGLDPVHVGLIFSAFGWTYAAMQLPGGWLV
DRVPPRILYTAALLLWSIATIMLGFAASFIALFVLRMAVGALEAPAYPINSRVVTTWFPERERATAIGVYTSGQFVGLAF
LTPVLAWLQAHYGWHMVFVATGGVGVLWALIWYTVYREPRDFNGVNQQEIELIQEGGGLVDIQKDVEKQKQAFSWLDLGI
VLSKRKLWGIYLGQFCLNSTLWFFLTWFPTYLVKYRGMDFIKSGLLASLPFLAAFVGVLCSGFFSDWLIRRGHSVGFARK
LPIIAGLLISTSIIGANFVDSTPLVITFLALAFFGNGLASITWSLVSTLAPARLLGLTGGTFNFIGNLSAIATPIVIGFL
ASGDSFAPAITYISVLALLGALSYILLVGKVERIEL

Specific function: Intake of galactonate into the cell [H]

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI9966811, Length=409, Percent_Identity=23.960880195599, Blast_Score=112, Evalue=1e-24,
Organism=Homo sapiens, GI21322234, Length=405, Percent_Identity=24.4444444444444, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI9945322, Length=404, Percent_Identity=24.5049504950495, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI148743791, Length=368, Percent_Identity=26.3586956521739, Blast_Score=99, Evalue=6e-21,
Organism=Homo sapiens, GI154350196, Length=414, Percent_Identity=24.1545893719807, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI6912666, Length=362, Percent_Identity=23.2044198895028, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI148728191, Length=274, Percent_Identity=27.3722627737226, Blast_Score=86, Evalue=7e-17,
Organism=Homo sapiens, GI5031955, Length=265, Percent_Identity=26.0377358490566, Blast_Score=78, Evalue=2e-14,
Organism=Homo sapiens, GI223718438, Length=227, Percent_Identity=25.1101321585903, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4885441, Length=362, Percent_Identity=23.4806629834254, Blast_Score=69, Evalue=1e-11,
Organism=Escherichia coli, GI87082320, Length=430, Percent_Identity=54.1860465116279, Blast_Score=484, Evalue=1e-138,
Organism=Escherichia coli, GI1789152, Length=439, Percent_Identity=42.1412300683371, Blast_Score=382, Evalue=1e-107,
Organism=Escherichia coli, GI1789515, Length=430, Percent_Identity=40.9302325581395, Blast_Score=356, Evalue=1e-99,
Organism=Escherichia coli, GI2367379, Length=412, Percent_Identity=31.5533980582524, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI2367193, Length=410, Percent_Identity=27.0731707317073, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1788573, Length=398, Percent_Identity=24.1206030150754, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87082071, Length=394, Percent_Identity=22.5888324873096, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082310, Length=300, Percent_Identity=22.6666666666667, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI115533556, Length=448, Percent_Identity=25.4464285714286, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI115533554, Length=433, Percent_Identity=25.4041570438799, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI17554148, Length=361, Percent_Identity=25.4847645429363, Blast_Score=98, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI17554962, Length=384, Percent_Identity=25.2604166666667, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17540458, Length=310, Percent_Identity=25.4838709677419, Blast_Score=89, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI71997452, Length=403, Percent_Identity=23.0769230769231, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17552542, Length=439, Percent_Identity=23.9179954441913, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560030, Length=366, Percent_Identity=24.8633879781421, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193205400, Length=246, Percent_Identity=23.9837398373984, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71991448, Length=350, Percent_Identity=23.4285714285714, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71991453, Length=350, Percent_Identity=23.4285714285714, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI86561091, Length=245, Percent_Identity=24.4897959183673, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI25141316, Length=341, Percent_Identity=23.7536656891496, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25141318, Length=246, Percent_Identity=24.390243902439, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI25141341, Length=337, Percent_Identity=24.0356083086053, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17569727, Length=399, Percent_Identity=23.5588972431078, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32565914, Length=370, Percent_Identity=21.6216216216216, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI32565916, Length=242, Percent_Identity=23.9669421487603, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17509575, Length=195, Percent_Identity=25.6410256410256, Blast_Score=66, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24655271, Length=405, Percent_Identity=23.7037037037037, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI20130135, Length=405, Percent_Identity=23.7037037037037, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24658658, Length=408, Percent_Identity=23.5294117647059, Blast_Score=105, Evalue=5e-23,
Organism=Drosophila melanogaster, GI28573299, Length=403, Percent_Identity=26.0545905707196, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24648416, Length=417, Percent_Identity=23.9808153477218, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI21356189, Length=417, Percent_Identity=23.9808153477218, Blast_Score=100, Evalue=3e-21,
Organism=Drosophila melanogaster, GI24641682, Length=394, Percent_Identity=25.8883248730964, Blast_Score=98, Evalue=9e-21,
Organism=Drosophila melanogaster, GI45550460, Length=403, Percent_Identity=23.5732009925558, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639764, Length=413, Percent_Identity=24.6973365617433, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI20129235, Length=316, Percent_Identity=27.8481012658228, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24655255, Length=352, Percent_Identity=23.5795454545455, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28573708, Length=450, Percent_Identity=22.8888888888889, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28573707, Length=450, Percent_Identity=22.8888888888889, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24583789, Length=362, Percent_Identity=23.7569060773481, Blast_Score=80, Evalue=3e-15,
Organism=Drosophila melanogaster, GI20130167, Length=437, Percent_Identity=23.5697940503432, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI24654215, Length=458, Percent_Identity=23.1441048034935, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI19922400, Length=458, Percent_Identity=23.1441048034935, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24653727, Length=393, Percent_Identity=22.1374045801527, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281361682, Length=341, Percent_Identity=22.5806451612903, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI19920686, Length=322, Percent_Identity=23.6024844720497, Blast_Score=72, Evalue=6e-13,
Organism=Drosophila melanogaster, GI62484226, Length=310, Percent_Identity=20.6451612903226, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24580790, Length=358, Percent_Identity=20.391061452514, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI45550364, Length=414, Percent_Identity=24.6376811594203, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24658674, Length=414, Percent_Identity=19.8067632850242, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24658666, Length=413, Percent_Identity=20.0968523002421, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004744
- InterPro:   IPR000849
- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 47763; Mature: 47763

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTRTMEGAASLVTPSRKRFFIMVLLFITVVINYLDRSNLSIAAPALTSELGLDPVHVGL
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCCCHHHHHH
IFSAFGWTYAAMQLPGGWLVDRVPPRILYTAALLLWSIATIMLGFAASFIALFVLRMAVG
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEAPAYPINSRVVTTWFPERERATAIGVYTSGQFVGLAFLTPVLAWLQAHYGWHMVFVA
HHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEE
TGGVGVLWALIWYTVYREPRDFNGVNQQEIELIQEGGGLVDIQKDVEKQKQAFSWLDLGI
ECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
VLSKRKLWGIYLGQFCLNSTLWFFLTWFPTYLVKYRGMDFIKSGLLASLPFLAAFVGVLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SGFFSDWLIRRGHSVGFARKLPIIAGLLISTSIIGANFVDSTPLVITFLALAFFGNGLAS
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHH
ITWSLVSTLAPARLLGLTGGTFNFIGNLSAIATPIVIGFLASGDSFAPAITYISVLALLG
HHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALSYILLVGKVERIEL
HHHHHHHHCCHHHCCC
>Mature Secondary Structure
MRTRTMEGAASLVTPSRKRFFIMVLLFITVVINYLDRSNLSIAAPALTSELGLDPVHVGL
CCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHCCCHHHHHH
IFSAFGWTYAAMQLPGGWLVDRVPPRILYTAALLLWSIATIMLGFAASFIALFVLRMAVG
HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALEAPAYPINSRVVTTWFPERERATAIGVYTSGQFVGLAFLTPVLAWLQAHYGWHMVFVA
HHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEEEE
TGGVGVLWALIWYTVYREPRDFNGVNQQEIELIQEGGGLVDIQKDVEKQKQAFSWLDLGI
ECCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHH
VLSKRKLWGIYLGQFCLNSTLWFFLTWFPTYLVKYRGMDFIKSGLLASLPFLAAFVGVLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SGFFSDWLIRRGHSVGFARKLPIIAGLLISTSIIGANFVDSTPLVITFLALAFFGNGLAS
HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHH
ITWSLVSTLAPARLLGLTGGTFNFIGNLSAIATPIVIGFLASGDSFAPAITYISVLALLG
HHHHHHHHHHHHHHHHCCCCHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALSYILLVGKVERIEL
HHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]