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The map label for this gene is oprD [H]

Identifier: 66044648

GI number: 66044648

Start: 1586621

End: 1587964

Strand: Reverse

Name: oprD [H]

Synonym: Psyr_1400

Alternate gene names: 66044648

Gene position: 1587964-1586621 (Counterclockwise)

Preceding gene: 66044651

Following gene: 66044647

Centisome position: 26.06

GC content: 55.8

Gene sequence:

>1344_bases
ATGAGAGTGATGAAGTGGAGCGCAATCGCACTGGCCGTTACGGCAGCCAGCGCCCAAATGGCAACAGCCGCACCTTTCGT
CAGCGATCAGGCTGATGCCAAGGGCTTTGTGGAAGGCAGCACGCTTGACCTGAAGTTGCGCAACTATTATTTCAACCGTG
ACAACAAAAACGGCAATAGTGATTTGAGAGACTGGACCCAAGGTATCTGGGCCAACTTCAGCTCCGGCTACACCCAAGGC
ACTATTGGTGTCGGCGTGGAAGCATTCGGCTACGGGGGCCTCAGGCTTTGGGGTCTCGACAAATACTCAGGCTCCGGAAA
TCTGGTCACTGATTCCAATGGTGATAACGAAGCCACGCAGGGCAAGCTCGGCGGCGCTGTAAAATTTCGTATATCGAAGA
CTGAGTTGAAAGTCGGTGACATGCAGCCCACAAGCCCAGTGTTTGGGGTTGGCGGTTCGCGCCTGCTACCTCAAACAGCT
AGCGGTCTGAGTCTGCAAAGTAGCGAGATTGCAGGCCTTGATCTTGAAGCGGGGCACTTCTACTCAGGCACCAGCCAGGA
CGATACCAGTCATAATGGCAGCATCTGGGCAACTTATGCTGGCGTCCCAGCCAACAGTGCAGATTTCGCTGGCGGCAAAT
ACGCAATTACTGACGGCCTTGGCGTTGCATTCTATGCCGCCAAGCTGGAAGACATCTGGGATCAGTACTACGGCAACGTG
AACTATGCACTGCCCCTAGGCAATGATCAGTCGCTGGCATTCGATGCGAACATTTATCGCACCGTTGACGAAGGCAGCGC
CAAAGCCGGCTCGATCAGCAACACCACGTTCTCCGGGTCCGCAGCGTATTCGTTCCTTGCTGCCCATACCGTGACCCTGG
CGTTCCAGAAGGTCAACGGTGACACCCCGTTCGACTACATCGGGATTGGTGACAATAATCGTGGTGGCGACTCGATCTTC
CTGAACAACTCGGTCCAGTACTCCGACTTCAATGGTCCGGGTGAGAAATCCTGGCAGGTTCGCTATGACCTGAACATGGA
GCCTTATGGCGTTCCTGGTCTGAGCTTCATGACCCGTTACATCAAAGGTACTGATATCGATGGCACCAATGTCGCCGCGG
ACTCGCCTTACCGCAAAAACGACCTCGCGCGCTCTCCGCTTTACGGCGCAGATGGCGAGCACCACGAGACCAACCTCGAA
GCCAAATACGTAGTGCAAAGCGGCCCGGCCAAGAACTTGTCCTTCCGCGCACGTCAGGCATGGCACCGCGCCAACGCCGA
CCAGGGCGAAGGCGACGTCAACGAGTTCCGCCTGATCGTCGATTACCCGATCTCGATCCTGTAA

Upstream 100 bases:

>100_bases
CGTGATATAGATTCCGCCGACAAAAATAGAAAGAGCCGCCCAGATAAAAAAACAGGTGGGACGGCAGACAAATCTTCTAA
AAACCAAAGGAGCAATCACG

Downstream 100 bases:

>100_bases
TCACCGCTCAGCACTCGTTAATAGAAGAAGCCCGGCACATGCCGGGCTTTTTCATGCCCCCAAGAAAGCACTCCAACGCC
ACATGCAAGCCAGCCCCGCC

Product: outer membrane porin

Products: NA

Alternate protein names: Imipenem/basic amino acid-specific outer membrane pore; Outer membrane protein D2 [H]

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MRVMKWSAIALAVTAASAQMATAAPFVSDQADAKGFVEGSTLDLKLRNYYFNRDNKNGNSDLRDWTQGIWANFSSGYTQG
TIGVGVEAFGYGGLRLWGLDKYSGSGNLVTDSNGDNEATQGKLGGAVKFRISKTELKVGDMQPTSPVFGVGGSRLLPQTA
SGLSLQSSEIAGLDLEAGHFYSGTSQDDTSHNGSIWATYAGVPANSADFAGGKYAITDGLGVAFYAAKLEDIWDQYYGNV
NYALPLGNDQSLAFDANIYRTVDEGSAKAGSISNTTFSGSAAYSFLAAHTVTLAFQKVNGDTPFDYIGIGDNNRGGDSIF
LNNSVQYSDFNGPGEKSWQVRYDLNMEPYGVPGLSFMTRYIKGTDIDGTNVAADSPYRKNDLARSPLYGADGEHHETNLE
AKYVVQSGPAKNLSFRARQAWHRANADQGEGDVNEFRLIVDYPISIL

Sequences:

>Translated_447_residues
MRVMKWSAIALAVTAASAQMATAAPFVSDQADAKGFVEGSTLDLKLRNYYFNRDNKNGNSDLRDWTQGIWANFSSGYTQG
TIGVGVEAFGYGGLRLWGLDKYSGSGNLVTDSNGDNEATQGKLGGAVKFRISKTELKVGDMQPTSPVFGVGGSRLLPQTA
SGLSLQSSEIAGLDLEAGHFYSGTSQDDTSHNGSIWATYAGVPANSADFAGGKYAITDGLGVAFYAAKLEDIWDQYYGNV
NYALPLGNDQSLAFDANIYRTVDEGSAKAGSISNTTFSGSAAYSFLAAHTVTLAFQKVNGDTPFDYIGIGDNNRGGDSIF
LNNSVQYSDFNGPGEKSWQVRYDLNMEPYGVPGLSFMTRYIKGTDIDGTNVAADSPYRKNDLARSPLYGADGEHHETNLE
AKYVVQSGPAKNLSFRARQAWHRANADQGEGDVNEFRLIVDYPISIL
>Mature_447_residues
MRVMKWSAIALAVTAASAQMATAAPFVSDQADAKGFVEGSTLDLKLRNYYFNRDNKNGNSDLRDWTQGIWANFSSGYTQG
TIGVGVEAFGYGGLRLWGLDKYSGSGNLVTDSNGDNEATQGKLGGAVKFRISKTELKVGDMQPTSPVFGVGGSRLLPQTA
SGLSLQSSEIAGLDLEAGHFYSGTSQDDTSHNGSIWATYAGVPANSADFAGGKYAITDGLGVAFYAAKLEDIWDQYYGNV
NYALPLGNDQSLAFDANIYRTVDEGSAKAGSISNTTFSGSAAYSFLAAHTVTLAFQKVNGDTPFDYIGIGDNNRGGDSIF
LNNSVQYSDFNGPGEKSWQVRYDLNMEPYGVPGLSFMTRYIKGTDIDGTNVAADSPYRKNDLARSPLYGADGEHHETNLE
AKYVVQSGPAKNLSFRARQAWHRANADQGEGDVNEFRLIVDYPISIL

Specific function: Porin with a specificity for basic amino acids. Also possesses serine protease activity [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the oprD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005318 [H]

Pfam domain/function: PF03573 OprD [H]

EC number: NA

Molecular weight: Translated: 48011; Mature: 48011

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVMKWSAIALAVTAASAQMATAAPFVSDQADAKGFVEGSTLDLKLRNYYFNRDNKNGNS
CCEEEEEEEEEEEEECCCHHHHCCCCCCCCCCCCCEECCCEEEEEEEEEEECCCCCCCCC
DLRDWTQGIWANFSSGYTQGTIGVGVEAFGYGGLRLWGLDKYSGSGNLVTDSNGDNEATQ
HHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCEEEEEEEEECCCCCEEECCCCCCCCCC
GKLGGAVKFRISKTELKVGDMQPTSPVFGVGGSRLLPQTASGLSLQSSEIAGLDLEAGHF
CCCCCEEEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCEEECCCCE
YSGTSQDDTSHNGSIWATYAGVPANSADFAGGKYAITDGLGVAFYAAKLEDIWDQYYGNV
ECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCE
NYALPLGNDQSLAFDANIYRTVDEGSAKAGSISNTTFSGSAAYSFLAAHTVTLAFQKVNG
EEEEECCCCCCEEEECEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHEEEEEEEECCC
DTPFDYIGIGDNNRGGDSIFLNNSVQYSDFNGPGEKSWQVRYDLNMEPYGVPGLSFMTRY
CCCEEEEECCCCCCCCCEEEEECCEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
IKGTDIDGTNVAADSPYRKNDLARSPLYGADGEHHETNLEAKYVVQSGPAKNLSFRARQA
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHH
WHRANADQGEGDVNEFRLIVDYPISIL
HHHCCCCCCCCCHHHEEEEEECCCCCC
>Mature Secondary Structure
MRVMKWSAIALAVTAASAQMATAAPFVSDQADAKGFVEGSTLDLKLRNYYFNRDNKNGNS
CCEEEEEEEEEEEEECCCHHHHCCCCCCCCCCCCCEECCCEEEEEEEEEEECCCCCCCCC
DLRDWTQGIWANFSSGYTQGTIGVGVEAFGYGGLRLWGLDKYSGSGNLVTDSNGDNEATQ
HHHHHHHHHHHCCCCCCCCCEEECCEEEECCCCEEEEEEEEECCCCCEEECCCCCCCCCC
GKLGGAVKFRISKTELKVGDMQPTSPVFGVGGSRLLPQTASGLSLQSSEIAGLDLEAGHF
CCCCCEEEEEEEEEEEEECCCCCCCCEEECCCCCCCCCCCCCCEECCCCCCCEEECCCCE
YSGTSQDDTSHNGSIWATYAGVPANSADFAGGKYAITDGLGVAFYAAKLEDIWDQYYGNV
ECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHHCCCE
NYALPLGNDQSLAFDANIYRTVDEGSAKAGSISNTTFSGSAAYSFLAAHTVTLAFQKVNG
EEEEECCCCCCEEEECEEEEEECCCCCCCCCCCCCEECCHHHHHHHHHHEEEEEEEECCC
DTPFDYIGIGDNNRGGDSIFLNNSVQYSDFNGPGEKSWQVRYDLNMEPYGVPGLSFMTRY
CCCEEEEECCCCCCCCCEEEEECCEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH
IKGTDIDGTNVAADSPYRKNDLARSPLYGADGEHHETNLEAKYVVQSGPAKNLSFRARQA
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHH
WHRANADQGEGDVNEFRLIVDYPISIL
HHHCCCCCCCCCHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1339257; 1427017; 10984043; 8012497; 2118530; 8843159; 9636669 [H]