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The map label for this gene is cspA [H]

Identifier: 66044651

GI number: 66044651

Start: 1589661

End: 1589882

Strand: Reverse

Name: cspA [H]

Synonym: Psyr_1403

Alternate gene names: 66044651

Gene position: 1589882-1589661 (Counterclockwise)

Preceding gene: 66044669

Following gene: 66044648

Centisome position: 26.09

GC content: 57.21

Gene sequence:

>222_bases
ATGGGGAATCGTGATACTGGCACCGTAAAGTGGTTCAACACCTCCAAGGGCTTCGGCTTCATCTCCCGGGATTCCGGCGA
CGATATTTTTGTGCATTTTCGTGCCATTCGCGGTGAGGGTCATCGCGTACTGGTCGAGGGGCAACGCGTCGAATTTTCCG
TGATGAACCGCGACAAAGGCCTGCAGGCCGAAGATGTCATTGCAGCCCTGCCCCGCCGCTGA

Upstream 100 bases:

>100_bases
TCTGGTGAGCCTGGCTGTCGCCATCGCAGCCGTCGCCTTGCACCTGGGCGTCAGCTTTTACAGGTCTTACACGCCCTCGT
CCGCGCCGCAAAGCCACGAC

Downstream 100 bases:

>100_bases
TTGTTTCAAGCAACAAAAAACCGCGACCTCCTGACGGAAGTCGCGGTTTTTTTATGGCAGCCGATCAATAGTGAGGTGGC
GGCGCATCTTCCTCGAAGGT

Product: cold-shock protein, DNA-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 72

Protein sequence:

>73_residues
MGNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKGLQAEDVIAALPRR

Sequences:

>Translated_73_residues
MGNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKGLQAEDVIAALPRR
>Mature_72_residues
GNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKGLQAEDVIAALPRR

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=58.7301587301587, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=54.4117647058823, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1787834, Length=69, Percent_Identity=50.7246376811594, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI2367114, Length=69, Percent_Identity=50.7246376811594, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=55.5555555555556, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1789979, Length=69, Percent_Identity=49.2753623188406, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=46.875, Blast_Score=63, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8252; Mature: 8121

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG
CCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCEEEEECCEEEEEEECCCCC
LQAEDVIAALPRR
CCHHHHEEECCCC
>Mature Secondary Structure 
GNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEFSVMNRDKG
CCCCCCEEEEEECCCCCEEEECCCCCEEEEEEEEECCCCCEEEEECCEEEEEEECCCCC
LQAEDVIAALPRR
CCHHHHEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]