| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is glnD [H]
Identifier: 66044589
GI number: 66044589
Start: 1519359
End: 1522055
Strand: Reverse
Name: glnD [H]
Synonym: Psyr_1341
Alternate gene names: 66044589
Gene position: 1522055-1519359 (Counterclockwise)
Preceding gene: 66044590
Following gene: 66044588
Centisome position: 24.98
GC content: 58.77
Gene sequence:
>2697_bases ATGCCGCAAGTAGATCCAGACTTGTTCGATCGAGGCCAGTTCCAGGCCGAACTGGCCTTGAAAGCCAGCCCCATCGCTGC GTTCAAGAAGGCCATCCGCCGAGCGAGAGACGTCCTTGATGAGCGCTTCAGGTCGGGCCGTGACATTCGACGACTGATCG AGGACCGGGCATGGTTTGTCGATAACATCCTGCAAAAGGCCTGGGATCAGTTCGAATGGAGTGAAGACGCCGATATCGCG CTTCTGGCAGTGGGTGGCTACGGGCGCGGCGAGCTGCATCCTTACTCGGACATCGATCTGCTGATCCTGCTGGACAGCGA TGACCACGAAGTTTTCCGCGAGCCCATCGAGCGGTTTCTGACCCTGCTGTGGGACATCGGCCTGGAAGTCGGACAAAGCG TACGCTCGGTCAACGAGTGCGCACAGGAAGGCCGCGCCGACCTGACCGTGATCACCAATCTGATGGAAAGTCGCACCATC GCCGGCCCCGAACACCTGCGCCAGCGCATGCTGGAGGTCACCAGCACCGAGCATATGTGGCCGAGCAAGGAGTTTTTCCT CGCCAAGCATGCGGAACAGAAAAAACGTCATCACAAGTACAACGACACCGAATACAACCTGGAGCCCAACGTCAAGGGCT CTCCGGGTGGCCTGCGCGATATTCAGACCATCCTCTGGGTCGCGCGGCGCCAGTACGGCACGCTGAACCTGCATGCACTG GCAGGCGAAGGCTTCCTGCTGGGCAGCGAAAACGCTCTGCTCGCCTCCTCCCAGGAGTTTTTGTGGAAAGTGCGTTACGC GCTGCACATGCTGGCCGGACGCTCCGAAGACCGGCTTCTGTTCGATTATCAGGTACGCATCGCCGGGTTGCTGGGCTATG AAGACAATGATGCCAAGCTGGCCATAGAGCGCTTCATGCAGAAGTACTACCGGGTGGTCATGAGCATCGCCGAACTCAGC GATCTGATCATCCAGCATTTCGAAGAAGTGATTCTTTCCGACGACAGCGGCACACCACAGCCGATCAATTCACGCTTTCA GCTGCACGATGGCTATATAGAAGCCACCCACCAGAACGTCTTCAAGCGCACCCCGTTTGCCATGATCGAAATCTTCGTGC TCATGGCCCAGCATCCGGAAATAAAGGGTGTACGTGCCGACACCATTCGCTTGCTGCGTGAACATCGGCACCTGATCAAC GACGAGTTCCGCAACGATATTCGTAACACCAGCCTGTTCATCGAGTTGTTCAAGTGCGAAATCGGTATCCACCGCAACCT GCGGCGGATGAACCGCTACGGCATTCTCGGCCTGTACCTGCCGGAGTTCGGCCATATCGTCGGCCAGATGCAGCATGACC TGTTTCACATTTATACCGTCGATGCGCACACGCTGAATCTGATCAAGCACCTGCGCAAGCTGCAATACACCGAAGTGTCC GAGAAATTTCCGCTGGCCAGCAAGATCATGGGCCGCCTGCCCAAGCCGGAGCTGATCTACCTGGCCGGGCTTTATCACGA CATCGGCAAGGGTCGTGGCGGTGATCACTCGGAGCTGGGCGCCATCGATGCGCAGGCGTTCGGTGCGCGCCATCATCTGC CTGCCTGGGACACCCGGCTTATTGTCTGGCTGGTGAGCAACCACCTGGTGATGTCGACCACCGCCCAGCGCAAGGACCTT TCCGATCCGCAGGTCATCCACGACTTTGCCCAGTTCGTGGGCGACGAAGTGCATCTGGATTATCTGTATGTGCTGACCGT CGCCGACATCAACGCGACCAATCCGACGCTCTGGAACTCATGGCGCGCCAGCCTGTTGCGTCAGCTGTACACCGAGACCA AGCGGGCCTTGCGCCGCGGCCTGGAAAACCCGGTCGACCGCGAAGAACAGATTCGCCGCACACAGACTGCCGCACTGGAT ATTCTGGTACGCAACGGCACCGATCCTGATGACGTCGAGCAACTCTGGTCAGCACTGGGCGATGATTACTTCCTGCGCCA CACCGCCGGCGACGTGGCCTGGCATAGCGATGCGATTCTGCAGCAACCAGCCGACGGCGGTCCGCTGGTGCTGATCAAGG AAACCACGCAGCGTGAATTCGAGGGCGGCACGCAGATCTTCATTTACGCCCCGGATCAGCATGACTTCTTCGCGGTTACC GTGGCGGCGATGGACCAGCTGAACCTGAACATTCACGACGCACGCATTATTACTTCCAGCAGCAAATTCACACTCGACAC CTACATCGTCCTCGACCATGAGGGCGGTTCGATCGGCAACAACCCGGAGCGCATTCAGGACATCCGCGAAGGCCTGACCG AAGCCCTGCGCAACCCGGATGATTACCCGACAATCATCAAGCGCCGCGTGCCACGTCAGCTCAAGCACTTTGCCTTCGCA CCGCAAGTCACCATTCATAACGACGCCCAGCGTCCGGTGACGGTACTCGAGTTGCTGGCACCGGACCGTCCAGGCCTGCT GGCGCGCATCGGCAAGATCTTCCTGGAGTTCGACCTGTCCCTGCAGAACGCCAAGATTGCAACGCTGGGCGAGCGCGTGG AAGACGTGTTCTTCATCACCGACGCCAACAATCACCCGCTGTCCGATCCACAACTGTGCCGCCAGTTGCAGGATGCGATC GTCAAGCAACTGAGCGTCAACTCAGAGCCGGGCAACGATTTGCGGATCAGCATATGA
Upstream 100 bases:
>100_bases GCAGCGATGACACCATTGCCCAAAAGGCTCCCTGACCCGATCATGCCCGGCTGAACGCCCGCCCGTCACCTGCACAGCCC GACACGAGGAATACTGCTCA
Downstream 100 bases:
>100_bases ATACTCGGCCATACGAATCGACTCAACGCAGCTCATTGAGGAACACGTTCCATGAATAACGCCATGCAACTGCTTCAGCC TTACCCTTTCGAGAAGCTGC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 898; Mature: 897
Protein sequence:
>898_residues MPQVDPDLFDRGQFQAELALKASPIAAFKKAIRRARDVLDERFRSGRDIRRLIEDRAWFVDNILQKAWDQFEWSEDADIA LLAVGGYGRGELHPYSDIDLLILLDSDDHEVFREPIERFLTLLWDIGLEVGQSVRSVNECAQEGRADLTVITNLMESRTI AGPEHLRQRMLEVTSTEHMWPSKEFFLAKHAEQKKRHHKYNDTEYNLEPNVKGSPGGLRDIQTILWVARRQYGTLNLHAL AGEGFLLGSENALLASSQEFLWKVRYALHMLAGRSEDRLLFDYQVRIAGLLGYEDNDAKLAIERFMQKYYRVVMSIAELS DLIIQHFEEVILSDDSGTPQPINSRFQLHDGYIEATHQNVFKRTPFAMIEIFVLMAQHPEIKGVRADTIRLLREHRHLIN DEFRNDIRNTSLFIELFKCEIGIHRNLRRMNRYGILGLYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKHLRKLQYTEVS EKFPLASKIMGRLPKPELIYLAGLYHDIGKGRGGDHSELGAIDAQAFGARHHLPAWDTRLIVWLVSNHLVMSTTAQRKDL SDPQVIHDFAQFVGDEVHLDYLYVLTVADINATNPTLWNSWRASLLRQLYTETKRALRRGLENPVDREEQIRRTQTAALD ILVRNGTDPDDVEQLWSALGDDYFLRHTAGDVAWHSDAILQQPADGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVT VAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGNNPERIQDIREGLTEALRNPDDYPTIIKRRVPRQLKHFAFA PQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQLQDAI VKQLSVNSEPGNDLRISI
Sequences:
>Translated_898_residues MPQVDPDLFDRGQFQAELALKASPIAAFKKAIRRARDVLDERFRSGRDIRRLIEDRAWFVDNILQKAWDQFEWSEDADIA LLAVGGYGRGELHPYSDIDLLILLDSDDHEVFREPIERFLTLLWDIGLEVGQSVRSVNECAQEGRADLTVITNLMESRTI AGPEHLRQRMLEVTSTEHMWPSKEFFLAKHAEQKKRHHKYNDTEYNLEPNVKGSPGGLRDIQTILWVARRQYGTLNLHAL AGEGFLLGSENALLASSQEFLWKVRYALHMLAGRSEDRLLFDYQVRIAGLLGYEDNDAKLAIERFMQKYYRVVMSIAELS DLIIQHFEEVILSDDSGTPQPINSRFQLHDGYIEATHQNVFKRTPFAMIEIFVLMAQHPEIKGVRADTIRLLREHRHLIN DEFRNDIRNTSLFIELFKCEIGIHRNLRRMNRYGILGLYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKHLRKLQYTEVS EKFPLASKIMGRLPKPELIYLAGLYHDIGKGRGGDHSELGAIDAQAFGARHHLPAWDTRLIVWLVSNHLVMSTTAQRKDL SDPQVIHDFAQFVGDEVHLDYLYVLTVADINATNPTLWNSWRASLLRQLYTETKRALRRGLENPVDREEQIRRTQTAALD ILVRNGTDPDDVEQLWSALGDDYFLRHTAGDVAWHSDAILQQPADGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVT VAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGNNPERIQDIREGLTEALRNPDDYPTIIKRRVPRQLKHFAFA PQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQLQDAI VKQLSVNSEPGNDLRISI >Mature_897_residues PQVDPDLFDRGQFQAELALKASPIAAFKKAIRRARDVLDERFRSGRDIRRLIEDRAWFVDNILQKAWDQFEWSEDADIAL LAVGGYGRGELHPYSDIDLLILLDSDDHEVFREPIERFLTLLWDIGLEVGQSVRSVNECAQEGRADLTVITNLMESRTIA GPEHLRQRMLEVTSTEHMWPSKEFFLAKHAEQKKRHHKYNDTEYNLEPNVKGSPGGLRDIQTILWVARRQYGTLNLHALA GEGFLLGSENALLASSQEFLWKVRYALHMLAGRSEDRLLFDYQVRIAGLLGYEDNDAKLAIERFMQKYYRVVMSIAELSD LIIQHFEEVILSDDSGTPQPINSRFQLHDGYIEATHQNVFKRTPFAMIEIFVLMAQHPEIKGVRADTIRLLREHRHLIND EFRNDIRNTSLFIELFKCEIGIHRNLRRMNRYGILGLYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKHLRKLQYTEVSE KFPLASKIMGRLPKPELIYLAGLYHDIGKGRGGDHSELGAIDAQAFGARHHLPAWDTRLIVWLVSNHLVMSTTAQRKDLS DPQVIHDFAQFVGDEVHLDYLYVLTVADINATNPTLWNSWRASLLRQLYTETKRALRRGLENPVDREEQIRRTQTAALDI LVRNGTDPDDVEQLWSALGDDYFLRHTAGDVAWHSDAILQQPADGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVTV AAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGNNPERIQDIREGLTEALRNPDDYPTIIKRRVPRQLKHFAFAP QVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLSLQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQLQDAIV KQLSVNSEPGNDLRISI
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=872, Percent_Identity=42.3165137614679, Blast_Score=682, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 102871; Mature: 102740
Theoretical pI: Translated: 6.03; Mature: 6.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQVDPDLFDRGQFQAELALKASPIAAFKKAIRRARDVLDERFRSGRDIRRLIEDRAWFV CCCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH DNILQKAWDQFEWSEDADIALLAVGGYGRGELHPYSDIDLLILLDSDDHEVFREPIERFL HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH TLLWDIGLEVGQSVRSVNECAQEGRADLTVITNLMESRTIAGPEHLRQRMLEVTSTEHMW HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC PSKEFFLAKHAEQKKRHHKYNDTEYNLEPNVKGSPGGLRDIQTILWVARRQYGTLNLHAL CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE AGEGFLLGSENALLASSQEFLWKVRYALHMLAGRSEDRLLFDYQVRIAGLLGYEDNDAKL ECCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCHHH AIERFMQKYYRVVMSIAELSDLIIQHFEEVILSDDSGTPQPINSRFQLHDGYIEATHQNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHH FKRTPFAMIEIFVLMAQHPEIKGVRADTIRLLREHRHLINDEFRNDIRNTSLFIELFKCE HHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IGIHRNLRRMNRYGILGLYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKHLRKLQYTEVS HHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHHHH EKFPLASKIMGRLPKPELIYLAGLYHDIGKGRGGDHSELGAIDAQAFGARHHLPAWDTRL HCCCCHHHHHCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHE IVWLVSNHLVMSTTAQRKDLSDPQVIHDFAQFVGDEVHLDYLYVLTVADINATNPTLWNS EEEECCCCEEEEECHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCHHHH WRASLLRQLYTETKRALRRGLENPVDREEQIRRTQTAALDILVRNGTDPDDVEQLWSALG HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCC DDYFLRHTAGDVAWHSDAILQQPADGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVT CCEEEEECCCCCCCCCCHHHCCCCCCCCEEEEECCHHHHCCCCCEEEEEECCCCCEEEEE VAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGNNPERIQDIREGLTEALRNPD EEHHHHCCCEEECEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC DYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLS CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC LQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQLQDAIVKQLSVNSEPGNDLRISI CCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC >Mature Secondary Structure PQVDPDLFDRGQFQAELALKASPIAAFKKAIRRARDVLDERFRSGRDIRRLIEDRAWFV CCCCCCHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH DNILQKAWDQFEWSEDADIALLAVGGYGRGELHPYSDIDLLILLDSDDHEVFREPIERFL HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH TLLWDIGLEVGQSVRSVNECAQEGRADLTVITNLMESRTIAGPEHLRQRMLEVTSTEHMW HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCC PSKEFFLAKHAEQKKRHHKYNDTEYNLEPNVKGSPGGLRDIQTILWVARRQYGTLNLHAL CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEE AGEGFLLGSENALLASSQEFLWKVRYALHMLAGRSEDRLLFDYQVRIAGLLGYEDNDAKL ECCEEEECCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEEECCCCCCHHH AIERFMQKYYRVVMSIAELSDLIIQHFEEVILSDDSGTPQPINSRFQLHDGYIEATHQNV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCHHHHHHHH FKRTPFAMIEIFVLMAQHPEIKGVRADTIRLLREHRHLINDEFRNDIRNTSLFIELFKCE HHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH IGIHRNLRRMNRYGILGLYLPEFGHIVGQMQHDLFHIYTVDAHTLNLIKHLRKLQYTEVS HHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHHHHHHH EKFPLASKIMGRLPKPELIYLAGLYHDIGKGRGGDHSELGAIDAQAFGARHHLPAWDTRL HCCCCHHHHHCCCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHE IVWLVSNHLVMSTTAQRKDLSDPQVIHDFAQFVGDEVHLDYLYVLTVADINATNPTLWNS EEEECCCCEEEEECHHHCCCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCCCCHHHH WRASLLRQLYTETKRALRRGLENPVDREEQIRRTQTAALDILVRNGTDPDDVEQLWSALG HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHCC DDYFLRHTAGDVAWHSDAILQQPADGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAVT CCEEEEECCCCCCCCCCHHHCCCCCCCCEEEEECCHHHHCCCCCEEEEEECCCCCEEEEE VAAMDQLNLNIHDARIITSSSKFTLDTYIVLDHEGGSIGNNPERIQDIREGLTEALRNPD EEHHHHCCCEEECEEEEECCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC DYPTIIKRRVPRQLKHFAFAPQVTIHNDAQRPVTVLELLAPDRPGLLARIGKIFLEFDLS CCHHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCC LQNAKIATLGERVEDVFFITDANNHPLSDPQLCRQLQDAIVKQLSVNSEPGNDLRISI CCCCCHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA