Click here to switch to the map view.

The map label for this gene is HrpR [H]

Identifier: 66044441

GI number: 66044441

Start: 1351297

End: 1352241

Strand: Direct

Name: HrpR [H]

Synonym: Psyr_1190

Alternate gene names: 66044441

Gene position: 1351297-1352241 (Clockwise)

Preceding gene: 66044440

Following gene: 66044442

Centisome position: 22.18

GC content: 57.99

Gene sequence:

>945_bases
ATGAGCACAGACATTGATAACGACGTTCTAACGTGTTGCAACGTAACTGCATTATCGGCCGGTCATCAAATTGTAATGAA
CAGCGTGCTAATGGATATGGACTTGCTTCTTTGCGGAGAAACCGGCACCGGCAAAGATACCCTGGCCAGCCGGATTCACG
AGCTGTCGAGCAGGACCGGGCCTTTTGTCGGCATGAACTGTGCGGCCATCCCCGAATCGTTGGCAGAGAGCCAGTTGTTC
GGCGTGGTCAATGGTGCGTTCACCGGCGTGTGTCGGGCTCGCGAGGGCTACATCGAAGCCTCCAGCGGCGGCACCCTCTA
TCTGGATGAAATCGACAGCATGCCGTTGAGCCTTCAGGCCAAGCTCTTGCGGGTGCTGGAAAGCAGGGGCGTCGAGCGAC
TCGGCTCGACCGACTTCATACCACTGGATCTGCGAGTGATTGCTTCGGCCCAGCGTCCGCTGGATGAACTGGTGGAACAA
GGACTTTTTCGTCGTGACCTGTTTTTCAGGCTCAATGTGCTGACACTGCAGTTGCCGGCCTTGCGCAAGCGTCGCGAGCA
GATTTTGCCATTGTTCGACCAGTTCACCCAGGACGTCGCCGCAGAATCCGGCCGTTCCGTTCCAACGCTCGACAATCGAC
GTGTACAGATCCTGTTGAGCCATGACTGGCCCGGCAACGTGCGCGAACTGAAGTCGGCTGCCAAGCGATTTGTCTTGGGG
TTGCCGTTGCTGGGCGCTGAGCCGGTCGAAGCGCGTGACCCGGTAACAGGGCTGCGCATGCAGATGCGCGTCATCGAGAA
AATGCTCATTCAGGATGCCTTGAAGCGACATCGGCACAATTTCGACGCTGTGCTCGAGGAGCTCGAGCTGCCCCGGCGCA
CCCTCTACCACCGCATGAAAGAGCTGGGTGTTGCTTCGCATATCGACCTGGTAGCCGAGTCCTGA

Upstream 100 bases:

>100_bases
GTGAAATTTTTCACAGTCCGTGGGGAACTAAATGACTATATGTGTGCCTTGTAAGACGTGGTATTAATATCCCGCCTCCC
TCCCGCCATGAGAGTGATCG

Downstream 100 bases:

>100_bases
ATCGCTGCTGCGCTCGCGCAACGCTGATGCCATTGGAGTCATGAAATGAATCTCGATGATGAATTTGACGATCACCTGGA
TGCGGAGCGCGTACCCAATC

Product: type III transcriptional regulator HrpR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MSTDIDNDVLTCCNVTALSAGHQIVMNSVLMDMDLLLCGETGTGKDTLASRIHELSSRTGPFVGMNCAAIPESLAESQLF
GVVNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTDFIPLDLRVIASAQRPLDELVEQ
GLFRRDLFFRLNVLTLQLPALRKRREQILPLFDQFTQDVAAESGRSVPTLDNRRVQILLSHDWPGNVRELKSAAKRFVLG
LPLLGAEPVEARDPVTGLRMQMRVIEKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMKELGVASHIDLVAES

Sequences:

>Translated_314_residues
MSTDIDNDVLTCCNVTALSAGHQIVMNSVLMDMDLLLCGETGTGKDTLASRIHELSSRTGPFVGMNCAAIPESLAESQLF
GVVNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTDFIPLDLRVIASAQRPLDELVEQ
GLFRRDLFFRLNVLTLQLPALRKRREQILPLFDQFTQDVAAESGRSVPTLDNRRVQILLSHDWPGNVRELKSAAKRFVLG
LPLLGAEPVEARDPVTGLRMQMRVIEKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMKELGVASHIDLVAES
>Mature_313_residues
STDIDNDVLTCCNVTALSAGHQIVMNSVLMDMDLLLCGETGTGKDTLASRIHELSSRTGPFVGMNCAAIPESLAESQLFG
VVNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQAKLLRVLESRGVERLGSTDFIPLDLRVIASAQRPLDELVEQG
LFRRDLFFRLNVLTLQLPALRKRREQILPLFDQFTQDVAAESGRSVPTLDNRRVQILLSHDWPGNVRELKSAAKRFVLGL
PLLGAEPVEARDPVTGLRMQMRVIEKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMKELGVASHIDLVAES

Specific function: Member of the two-component regulatory system hrpR/hrpS that regulates the activation of the sigma factor hrpL which itself induces the expression of hprD as well as other hrp loci which are involved in plant pathogenicity, hrmA and avr genes. Probably in

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=319, Percent_Identity=38.871473354232, Blast_Score=215, Evalue=2e-57,
Organism=Escherichia coli, GI87082117, Length=209, Percent_Identity=51.6746411483254, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI1789233, Length=292, Percent_Identity=38.6986301369863, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1790437, Length=278, Percent_Identity=38.4892086330935, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1786524, Length=292, Percent_Identity=40.7534246575342, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI87082152, Length=299, Percent_Identity=38.4615384615385, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI1789087, Length=209, Percent_Identity=46.4114832535885, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1788905, Length=200, Percent_Identity=44.5, Blast_Score=176, Evalue=2e-45,
Organism=Escherichia coli, GI1787583, Length=234, Percent_Identity=40.1709401709402, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1790299, Length=204, Percent_Identity=44.1176470588235, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI87081872, Length=210, Percent_Identity=41.4285714285714, Blast_Score=162, Evalue=2e-41,
Organism=Escherichia coli, GI1789828, Length=223, Percent_Identity=38.5650224215247, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI87081858, Length=286, Percent_Identity=30.4195804195804, Blast_Score=111, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 34929; Mature: 34798

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTDIDNDVLTCCNVTALSAGHQIVMNSVLMDMDLLLCGETGTGKDTLASRIHELSSRTG
CCCCCCCCHHHHHCHHHHHCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCC
PFVGMNCAAIPESLAESQLFGVVNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCHHHHH
KLLRVLESRGVERLGSTDFIPLDLRVIASAQRPLDELVEQGLFRRDLFFRLNVLTLQLPA
HHHHHHHHCCHHHCCCCCCEEHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHEECHH
LRKRREQILPLFDQFTQDVAAESGRSVPTLDNRRVQILLSHDWPGNVRELKSAAKRFVLG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
LPLLGAEPVEARDPVTGLRMQMRVIEKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
ELGVASHIDLVAES
HCCCHHHHHHHCCC
>Mature Secondary Structure 
STDIDNDVLTCCNVTALSAGHQIVMNSVLMDMDLLLCGETGTGKDTLASRIHELSSRTG
CCCCCCCHHHHHCHHHHHCCHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCC
PFVGMNCAAIPESLAESQLFGVVNGAFTGVCRAREGYIEASSGGTLYLDEIDSMPLSLQA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCHHHHH
KLLRVLESRGVERLGSTDFIPLDLRVIASAQRPLDELVEQGLFRRDLFFRLNVLTLQLPA
HHHHHHHHCCHHHCCCCCCEEHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHEECHH
LRKRREQILPLFDQFTQDVAAESGRSVPTLDNRRVQILLSHDWPGNVRELKSAAKRFVLG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC
LPLLGAEPVEARDPVTGLRMQMRVIEKMLIQDALKRHRHNFDAVLEELELPRRTLYHRMK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
ELGVASHIDLVAES
HCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8106313 [H]