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The map label for this gene is fecI [C]

Identifier: 66044358

GI number: 66044358

Start: 1254157

End: 1254720

Strand: Reverse

Name: fecI [C]

Synonym: Psyr_1107

Alternate gene names: 66044358

Gene position: 1254720-1254157 (Counterclockwise)

Preceding gene: 66044359

Following gene: 66044357

Centisome position: 20.59

GC content: 58.16

Gene sequence:

>564_bases
ATGAGAAGCATTATCATTTGCTCGAATCTCCGGTCGGGCTCCTTCGTGTCGCACTCAGACTTCAACAACGTGTTTCTGGC
CCAGCGCCCGGTCCTGTTACGTACTCTGCAACGCATGGTTGGCAATCAAAGCACTGCTGAAGACCTGCTTCAGGAAACCT
GGCTGCGCGTCAGCCGTGCATTGACCGAACACCCGGTCGCTCATCTTGAACCCTTCGTTTTCCAGACCGCTCGCAACCTG
GCGCTGGATCATTTGCGTGCGCGGCGCATCCACGGCCGGACCATGCTCGAAGACGTGTCGCCTGCACGGCTCGAAAATGT
CGTGGCCCAGCTGGGCTCGCCCGAAGATGCTGCACACGCCAAGCGCCTGCTGGAGAACCTGAGCGCCAGTCTGAGCACGC
TGAGCCCGCGCCAGCAGAAAATCTTTACCCTCAGCCGCCTCGATGGCCGCAGCTATCTGGAAATTGCCGAGCAGTTGCAG
GTCTCTGCCAGTACCGTACAAAAAGAATTGAAACTGATCATGGCGATCTGCATAGGCGTCCTTTCCAGGCTTGACCCACC
CTGA

Upstream 100 bases:

>100_bases
ATGCACTGCGTGGGCATGCGGCTTCGGGCGTCCTCGCGCGGTCTTGAGCGCGCCTCTGGCGGACAAATATTTACAGATCC
AGGCTTGACCCTCCCAGAAG

Downstream 100 bases:

>100_bases
ACCCTGCCGCACGCTGCCACACTCATATCGATACAGTTTCAGGATTGCCGAGGAACACCGTGGCCCCGAAAACAGAACGT
CCGCACGCGATCGCGCAGGA

Product: sigma-70 region 2

Products: NA

Alternate protein names: Sigma-; ECF Subfamily RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma-70 Family Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Factor FecI; RNA Polymerase Sigma Factor; Fec I Like Protein; RNA Polymerase ECF-Subfamily Sigma-70 Factor; ECF Family Sigma Factor; RNA Polymerase ECF-Type Sigma Factor FecI; AlteRNAtive RNA Polymerase Sigma Factor SigE; FecI-Like Sigma-; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; Extracytoplasmic-Function Sigma-70 Factor PvdS; DNA-Directed RNA Polymeracialized Sigma Subunit; ECF Subfamily RNA Polymerase Sigma-70 Factor; ECF Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase ECF-Family Sigma Factor; ECF Sigma Factor FecI Family; RNA Polymerase Sigma Factor FecI Family

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRSIIICSNLRSGSFVSHSDFNNVFLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRALTEHPVAHLEPFVFQTARNL
ALDHLRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHAKRLLENLSASLSTLSPRQQKIFTLSRLDGRSYLEIAEQLQ
VSASTVQKELKLIMAICIGVLSRLDPP

Sequences:

>Translated_187_residues
MRSIIICSNLRSGSFVSHSDFNNVFLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRALTEHPVAHLEPFVFQTARNL
ALDHLRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHAKRLLENLSASLSTLSPRQQKIFTLSRLDGRSYLEIAEQLQ
VSASTVQKELKLIMAICIGVLSRLDPP
>Mature_187_residues
MRSIIICSNLRSGSFVSHSDFNNVFLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRALTEHPVAHLEPFVFQTARNL
ALDHLRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHAKRLLENLSASLSTLSPRQQKIFTLSRLDGRSYLEIAEQLQ
VSASTVQKELKLIMAICIGVLSRLDPP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20973; Mature: 20973

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIIICSNLRSGSFVSHSDFNNVFLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRA
CCCEEEECCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LTEHPVAHLEPFVFQTARNLALDHLRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHCCCCCHHHHH
KRLLENLSASLSTLSPRQQKIFTLSRLDGRSYLEIAEQLQVSASTVQKELKLIMAICIGV
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRLDPP
HHHCCCC
>Mature Secondary Structure
MRSIIICSNLRSGSFVSHSDFNNVFLAQRPVLLRTLQRMVGNQSTAEDLLQETWLRVSRA
CCCEEEECCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
LTEHPVAHLEPFVFQTARNLALDHLRARRIHGRTMLEDVSPARLENVVAQLGSPEDAAHA
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHCCCCCHHHHH
KRLLENLSASLSTLSPRQQKIFTLSRLDGRSYLEIAEQLQVSASTVQKELKLIMAICIGV
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSRLDPP
HHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA