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The map label for this gene is algK [H]

Identifier: 66044313

GI number: 66044313

Start: 1200514

End: 1201926

Strand: Reverse

Name: algK [H]

Synonym: Psyr_1060

Alternate gene names: 66044313

Gene position: 1201926-1200514 (Counterclockwise)

Preceding gene: 66044314

Following gene: 66044312

Centisome position: 19.72

GC content: 62.28

Gene sequence:

>1413_bases
ATGAACAGCCCACTACGACGCCTGTCGACCCCCACGCTATTGAGCCTCGCCGTCGCGCTCGGCCTGAGCGGCTGTGCCGG
CCTGCCTGATCAACGCCTTGCCAATGAAGCCCTGAAAAACGGCGACACGGCATTGGCGGAGCAGAACTATCGGCAGCTGG
CGGACCTGGGCTATAGCGACGCGCAGGTCGGCCTGGCTGATATTCAGGTCGCGACTCGCGACCCGGCTCAGCTCAAGCAG
GCCGAGGCTACCTACCGCGCTGCAGCAGAGACGTCGCCTCGTGCGCAGTCGCGCCTGGGCCGTCTGCTGGCGGCCAAGCC
CGACGCCACCGAAGCCGAACACCGCGAAGCCGAAGGCCTGCTGAAAAAGGCCTTCGCCAATGGCGAATCCGGCACGCTGA
TCCCGCTGGCAATGCTGTATCTGCAATACCCGCACACCTTCCCTGAAGTGAATGCGCAGCAGAAGATCAGCGAGTGGCGC
GCCGCCGGTTATCCGGAAGCAGGTCTGGCTCAGGTGCTGCTGTATCGCACCCAGGGCACTTATGCTCAACACCTCGACGA
GGTCGAGAGCATCTGCAAACAGGCGCTGTCGGCCACGGATATCTGCTACGTCGAACTGGCCACTGTGTACCAGACACGCG
GCCAGGCCGAGCAACGCACGGCTTTGATCGAAAAGCTCAAGAGCGAATACGCCGCCGGCCGCGTCAATGCACAACGAGTG
GACAGCGTCGCGCGTGTACTGGGTGACTCCACCATCGGTACGCCGGACGAAAAGACCGCTCAGCAATTGCTGGAAAGCGT
TGCGCCGGGCTACCCGATTTCATGGGTCACGCTGGCCAAACTGCTTTACGACTTCCCCGAACTGGGCGACGTCAACAAGA
TGATGGAATACCTGAACAACGGCCGTGCGGCAGACCAGCCTCGCGCCGAACTGCTGCTGGGGCGCCTGTACTACGAAGGC
AAATGGGTCACGCCCGATGCCGTCAAGGCCGAAGAGCATCTGAAGAAAGCCACCGCAACGGAAATCTCTGCCCATTACTA
CCTGGGTCAGATCTACCGTCGCGGCTACCTGGGCCAGGTCTACTCGCAAAAGGCCGTGGACGAGTTGCTGACCGCCGCCC
GTGGTGGCCAGAACAGCGCCGACTTCGCCCTTGCGCAACTGTTCTCGCAGGGCAAGGGCACTATGCCCGACCCGGTCAAC
GCCTGGGTGTTCGCGCAACTGGCGCTGGCCAGTCAGACCCCGCAAGCGACCGAGCTTGCCGAGGCCCTCAACACACAACT
GCCGCCTGAAAAGCTCGCCACCGCCAAAGACCTGTTGGCACGCGAGCAAAAAGTCCGGGGCGCTACTGCCACTCAGAACG
CGATGGCATTGCAGGCCCTGCAAGAAGAAAAAGACGGTGAGGAAGCATTATGA

Upstream 100 bases:

>100_bases
TGAGCAGCTCGCTTGCCGGTCGCCCTGTCGAAGTGGTCAGCGATCGCGGCCCGTCCGTGAACTGGCTGATCGATAAAGCC
ATGGCTGCGGGTCTGTAACC

Downstream 100 bases:

>100_bases
AGTTGAATCCCCTGATGGCCGCCGGCATGGGCCTTGGCTTCACCCTGTTGTGGGCCTGCCCGACGCTGGCAGCGCTGACC
GAACAACCGCAGAATTTCGG

Product: Sel1 repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 470; Mature: 470

Protein sequence:

>470_residues
MNSPLRRLSTPTLLSLAVALGLSGCAGLPDQRLANEALKNGDTALAEQNYRQLADLGYSDAQVGLADIQVATRDPAQLKQ
AEATYRAAAETSPRAQSRLGRLLAAKPDATEAEHREAEGLLKKAFANGESGTLIPLAMLYLQYPHTFPEVNAQQKISEWR
AAGYPEAGLAQVLLYRTQGTYAQHLDEVESICKQALSATDICYVELATVYQTRGQAEQRTALIEKLKSEYAAGRVNAQRV
DSVARVLGDSTIGTPDEKTAQQLLESVAPGYPISWVTLAKLLYDFPELGDVNKMMEYLNNGRAADQPRAELLLGRLYYEG
KWVTPDAVKAEEHLKKATATEISAHYYLGQIYRRGYLGQVYSQKAVDELLTAARGGQNSADFALAQLFSQGKGTMPDPVN
AWVFAQLALASQTPQATELAEALNTQLPPEKLATAKDLLAREQKVRGATATQNAMALQALQEEKDGEEAL

Sequences:

>Translated_470_residues
MNSPLRRLSTPTLLSLAVALGLSGCAGLPDQRLANEALKNGDTALAEQNYRQLADLGYSDAQVGLADIQVATRDPAQLKQ
AEATYRAAAETSPRAQSRLGRLLAAKPDATEAEHREAEGLLKKAFANGESGTLIPLAMLYLQYPHTFPEVNAQQKISEWR
AAGYPEAGLAQVLLYRTQGTYAQHLDEVESICKQALSATDICYVELATVYQTRGQAEQRTALIEKLKSEYAAGRVNAQRV
DSVARVLGDSTIGTPDEKTAQQLLESVAPGYPISWVTLAKLLYDFPELGDVNKMMEYLNNGRAADQPRAELLLGRLYYEG
KWVTPDAVKAEEHLKKATATEISAHYYLGQIYRRGYLGQVYSQKAVDELLTAARGGQNSADFALAQLFSQGKGTMPDPVN
AWVFAQLALASQTPQATELAEALNTQLPPEKLATAKDLLAREQKVRGATATQNAMALQALQEEKDGEEAL
>Mature_470_residues
MNSPLRRLSTPTLLSLAVALGLSGCAGLPDQRLANEALKNGDTALAEQNYRQLADLGYSDAQVGLADIQVATRDPAQLKQ
AEATYRAAAETSPRAQSRLGRLLAAKPDATEAEHREAEGLLKKAFANGESGTLIPLAMLYLQYPHTFPEVNAQQKISEWR
AAGYPEAGLAQVLLYRTQGTYAQHLDEVESICKQALSATDICYVELATVYQTRGQAEQRTALIEKLKSEYAAGRVNAQRV
DSVARVLGDSTIGTPDEKTAQQLLESVAPGYPISWVTLAKLLYDFPELGDVNKMMEYLNNGRAADQPRAELLLGRLYYEG
KWVTPDAVKAEEHLKKATATEISAHYYLGQIYRRGYLGQVYSQKAVDELLTAARGGQNSADFALAQLFSQGKGTMPDPVN
AWVFAQLALASQTPQATELAEALNTQLPPEKLATAKDLLAREQKVRGATATQNAMALQALQEEKDGEEAL

Specific function: May be involved in the polymerization of mannuronate to alginate [H]

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AlgK family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 51113; Mature: 51113

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSPLRRLSTPTLLSLAVALGLSGCAGLPDQRLANEALKNGDTALAEQNYRQLADLGYSD
CCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
AQVGLADIQVATRDPAQLKQAEATYRAAAETSPRAQSRLGRLLAAKPDATEAEHREAEGL
HHCCHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LKKAFANGESGTLIPLAMLYLQYPHTFPEVNAQQKISEWRAAGYPEAGLAQVLLYRTQGT
HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
YAQHLDEVESICKQALSATDICYVELATVYQTRGQAEQRTALIEKLKSEYAAGRVNAQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH
DSVARVLGDSTIGTPDEKTAQQLLESVAPGYPISWVTLAKLLYDFPELGDVNKMMEYLNN
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GRAADQPRAELLLGRLYYEGKWVTPDAVKAEEHLKKATATEISAHYYLGQIYRRGYLGQV
CCCCCCCHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YSQKAVDELLTAARGGQNSADFALAQLFSQGKGTMPDPVNAWVFAQLALASQTPQATELA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
EALNTQLPPEKLATAKDLLAREQKVRGATATQNAMALQALQEEKDGEEAL
HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MNSPLRRLSTPTLLSLAVALGLSGCAGLPDQRLANEALKNGDTALAEQNYRQLADLGYSD
CCCCHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
AQVGLADIQVATRDPAQLKQAEATYRAAAETSPRAQSRLGRLLAAKPDATEAEHREAEGL
HHCCHHHEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LKKAFANGESGTLIPLAMLYLQYPHTFPEVNAQQKISEWRAAGYPEAGLAQVLLYRTQGT
HHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCH
YAQHLDEVESICKQALSATDICYVELATVYQTRGQAEQRTALIEKLKSEYAAGRVNAQRV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHH
DSVARVLGDSTIGTPDEKTAQQLLESVAPGYPISWVTLAKLLYDFPELGDVNKMMEYLNN
HHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHC
GRAADQPRAELLLGRLYYEGKWVTPDAVKAEEHLKKATATEISAHYYLGQIYRRGYLGQV
CCCCCCCHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
YSQKAVDELLTAARGGQNSADFALAQLFSQGKGTMPDPVNAWVFAQLALASQTPQATELA
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHH
EALNTQLPPEKLATAKDLLAREQKVRGATATQNAMALQALQEEKDGEEAL
HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]