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The map label for this gene is algE [H]

Identifier: 66044312

GI number: 66044312

Start: 1199033

End: 1200517

Strand: Reverse

Name: algE [H]

Synonym: Psyr_1059

Alternate gene names: 66044312

Gene position: 1200517-1199033 (Counterclockwise)

Preceding gene: 66044313

Following gene: 66044311

Centisome position: 19.7

GC content: 62.09

Gene sequence:

>1485_bases
ATGAAGTTGAATCCCCTGATGGCCGCCGGCATGGGCCTTGGCTTCACCCTGTTGTGGGCCTGCCCGACGCTGGCAGCGCT
GACCGAACAACCGCAGAATTTCGGTATCGAAATCAAAGCCACGGCGCAGGCCGAGGATGATCGCGATCTGGGCACCCGTT
CGGGCGGCGACGTCAACGGTGTGGGCCTGGACCTGCGTCCCTGGGTCTATGGCGAGCGCGGCGACTGGAGCGGTTACGCG
ATGGGCCAGGTGGTCACCGCCACCGACATCATTCAGACCGACCCGCTGGAGCAGAGCAACAGCGACGGCAGCGGCACCCA
GACTTCGCGTGGCACCGCCAGCGAGCGCGAAGCCGACAAAACCTACGCGGCACTGCGTGAGTTCTGGATCGGCTACAGCG
GCTTCACGCCCTACCCTGGCGAGATCCTGAAAATCGGTCGTCAGCGTCTGCGCAACGACGACGGTCAATGGCACGACACC
AACATCGAGGCCATCAACTGGTCGTTCGATACCACACTGTTGCGCGCTGAACTGGGTGCTGCCCAGCGTTTCAGCGAATA
CCGCACCGACCTGACCGAACTGGCACCTGACGATGAAGATCGCAAACACCTGTTCGGCTCGGTCAGCTATCAGTGGACAC
CAGGCAACTGGGCCGGTATCCGCGCTCACCACAGTGCTGACGACGGCAAGCTCAAGTCGCAGGGCCAGGTGCTGGATGAT
CTGGACAAGACGTCCAATGGCGATCTGACCTGGGTCGGCCTGCAGGCTGACAGCGATGCCTACAACTATCGCAGCAACAC
CAATCAGCTCAACTACTGGGGCAGCCTGACCTGGCTGAACGGAACGCGCGACGAAATCGGCGTGACCTCTGCTCCCAACG
ACCAGTTCATCGCCGGCGAAAAGAACAGCCGTGACATGAATGGCTGGGCCACCGACCTGGGCCTGCGCCTGCGCCTGGAC
CCGCAATGGCAAGTCGGCGCCGCCTACTCGCGCGCCAGCAAGGACTACGTCCAGAACGGTCTGGAAAGTAACCGCTCCAA
CTGGACCGGCACGCGTTCGCGCATCCATCGCTTCGGCGAGGCCTTCCAGGGCGAAATGGCCAACGTGGAAACCGGCTCGC
TGTTCGCTTCGTGGCAGATGAACGAGGAATACGACGCATCGCTGATCTACCACAAGTTCCGTCGCGTGGACGGCAACACC
GGTATCGGCGGCTCGGGCATCAACGCGGTGAACGACAACCAGGACGGTACGTTCAGCTCGCTGCCACTGGAAGACGGCAG
CAAGGACCTGGGTCAGGAAATGGACCTGGTCGTGACCAAGTACTTCAAGCAAGGCCTGCTGCCGGCTTCGCTGAGCCAGT
CGTTCGATGAACCTTCGGCACTGGTGCGCCTGCGCGCAGGTGTCTTCAAGCCAGGCGACGCGTATCAGAACAACGTGGAC
AGCTACATGCACCGCGCTGTTGTCGACGTCATCTGGCGCTTCTGA

Upstream 100 bases:

>100_bases
ACCTGTTGGCACGCGAGCAAAAAGTCCGGGGCGCTACTGCCACTCAGAACGCGATGGCATTGCAGGCCCTGCAAGAAGAA
AAAGACGGTGAGGAAGCATT

Downstream 100 bases:

>100_bases
TGCGAACCGCCAAAGGAGTGCCAGAGATGAACAGTCATACAAGCAACGGGCGCAGCCGGCACTGGCCGCACGCCCTGCTC
GAAAGCGCACTGCTGACCAG

Product: alginate biosynthesis protein AlgE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 494; Mature: 494

Protein sequence:

>494_residues
MKLNPLMAAGMGLGFTLLWACPTLAALTEQPQNFGIEIKATAQAEDDRDLGTRSGGDVNGVGLDLRPWVYGERGDWSGYA
MGQVVTATDIIQTDPLEQSNSDGSGTQTSRGTASEREADKTYAALREFWIGYSGFTPYPGEILKIGRQRLRNDDGQWHDT
NIEAINWSFDTTLLRAELGAAQRFSEYRTDLTELAPDDEDRKHLFGSVSYQWTPGNWAGIRAHHSADDGKLKSQGQVLDD
LDKTSNGDLTWVGLQADSDAYNYRSNTNQLNYWGSLTWLNGTRDEIGVTSAPNDQFIAGEKNSRDMNGWATDLGLRLRLD
PQWQVGAAYSRASKDYVQNGLESNRSNWTGTRSRIHRFGEAFQGEMANVETGSLFASWQMNEEYDASLIYHKFRRVDGNT
GIGGSGINAVNDNQDGTFSSLPLEDGSKDLGQEMDLVVTKYFKQGLLPASLSQSFDEPSALVRLRAGVFKPGDAYQNNVD
SYMHRAVVDVIWRF

Sequences:

>Translated_494_residues
MKLNPLMAAGMGLGFTLLWACPTLAALTEQPQNFGIEIKATAQAEDDRDLGTRSGGDVNGVGLDLRPWVYGERGDWSGYA
MGQVVTATDIIQTDPLEQSNSDGSGTQTSRGTASEREADKTYAALREFWIGYSGFTPYPGEILKIGRQRLRNDDGQWHDT
NIEAINWSFDTTLLRAELGAAQRFSEYRTDLTELAPDDEDRKHLFGSVSYQWTPGNWAGIRAHHSADDGKLKSQGQVLDD
LDKTSNGDLTWVGLQADSDAYNYRSNTNQLNYWGSLTWLNGTRDEIGVTSAPNDQFIAGEKNSRDMNGWATDLGLRLRLD
PQWQVGAAYSRASKDYVQNGLESNRSNWTGTRSRIHRFGEAFQGEMANVETGSLFASWQMNEEYDASLIYHKFRRVDGNT
GIGGSGINAVNDNQDGTFSSLPLEDGSKDLGQEMDLVVTKYFKQGLLPASLSQSFDEPSALVRLRAGVFKPGDAYQNNVD
SYMHRAVVDVIWRF
>Mature_494_residues
MKLNPLMAAGMGLGFTLLWACPTLAALTEQPQNFGIEIKATAQAEDDRDLGTRSGGDVNGVGLDLRPWVYGERGDWSGYA
MGQVVTATDIIQTDPLEQSNSDGSGTQTSRGTASEREADKTYAALREFWIGYSGFTPYPGEILKIGRQRLRNDDGQWHDT
NIEAINWSFDTTLLRAELGAAQRFSEYRTDLTELAPDDEDRKHLFGSVSYQWTPGNWAGIRAHHSADDGKLKSQGQVLDD
LDKTSNGDLTWVGLQADSDAYNYRSNTNQLNYWGSLTWLNGTRDEIGVTSAPNDQFIAGEKNSRDMNGWATDLGLRLRLD
PQWQVGAAYSRASKDYVQNGLESNRSNWTGTRSRIHRFGEAFQGEMANVETGSLFASWQMNEEYDASLIYHKFRRVDGNT
GIGGSGINAVNDNQDGTFSSLPLEDGSKDLGQEMDLVVTKYFKQGLLPASLSQSFDEPSALVRLRAGVFKPGDAYQNNVD
SYMHRAVVDVIWRF

Specific function: Has non-porin-like, channel-forming properties and probably functions as an alginate permeability pore [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AlgE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 54793; Mature: 54793

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNPLMAAGMGLGFTLLWACPTLAALTEQPQNFGIEIKATAQAEDDRDLGTRSGGDVNG
CCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
VGLDLRPWVYGERGDWSGYAMGQVVTATDIIQTDPLEQSNSDGSGTQTSRGTASEREADK
CCEECCCCEECCCCCCCCEECCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
TYAALREFWIGYSGFTPYPGEILKIGRQRLRNDDGQWHDTNIEAINWSFDTTLLRAELGA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCEEEEECCHHHHHHHHHHHH
AQRFSEYRTDLTELAPDDEDRKHLFGSVSYQWTPGNWAGIRAHHSADDGKLKSQGQVLDD
HHHHHHHHHHHHHCCCCCCCHHHHEECCEEEECCCCCCEEEEECCCCCCCCCCCCCHHHH
LDKTSNGDLTWVGLQADSDAYNYRSNTNQLNYWGSLTWLNGTRDEIGVTSAPNDQFIAGE
HHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEECC
KNSRDMNGWATDLGLRLRLDPQWQVGAAYSRASKDYVQNGLESNRSNWTGTRSRIHRFGE
CCCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AFQGEMANVETGSLFASWQMNEEYDASLIYHKFRRVDGNTGIGGSGINAVNDNQDGTFSS
HHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
LPLEDGSKDLGQEMDLVVTKYFKQGLLPASLSQSFDEPSALVRLRAGVFKPGDAYQNNVD
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCHH
SYMHRAVVDVIWRF
HHHHHHHHHHHHCC
>Mature Secondary Structure
MKLNPLMAAGMGLGFTLLWACPTLAALTEQPQNFGIEIKATAQAEDDRDLGTRSGGDVNG
CCCCCHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCC
VGLDLRPWVYGERGDWSGYAMGQVVTATDIIQTDPLEQSNSDGSGTQTSRGTASEREADK
CCEECCCCEECCCCCCCCEECCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
TYAALREFWIGYSGFTPYPGEILKIGRQRLRNDDGQWHDTNIEAINWSFDTTLLRAELGA
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCEECCCEEEEECCHHHHHHHHHHHH
AQRFSEYRTDLTELAPDDEDRKHLFGSVSYQWTPGNWAGIRAHHSADDGKLKSQGQVLDD
HHHHHHHHHHHHHCCCCCCCHHHHEECCEEEECCCCCCEEEEECCCCCCCCCCCCCHHHH
LDKTSNGDLTWVGLQADSDAYNYRSNTNQLNYWGSLTWLNGTRDEIGVTSAPNDQFIAGE
HHCCCCCCEEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEECC
KNSRDMNGWATDLGLRLRLDPQWQVGAAYSRASKDYVQNGLESNRSNWTGTRSRIHRFGE
CCCCCCCCEEECCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
AFQGEMANVETGSLFASWQMNEEYDASLIYHKFRRVDGNTGIGGSGINAVNDNQDGTFSS
HHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEE
LPLEDGSKDLGQEMDLVVTKYFKQGLLPASLSQSFDEPSALVRLRAGVFKPGDAYQNNVD
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHCCCCCCHHHHCCHH
SYMHRAVVDVIWRF
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]