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The map label for this gene is psd [H]

Identifier: 66043826

GI number: 66043826

Start: 634369

End: 636201

Strand: Reverse

Name: psd [H]

Synonym: Psyr_0559

Alternate gene names: 66043826

Gene position: 636201-634369 (Counterclockwise)

Preceding gene: 66043827

Following gene: 66043825

Centisome position: 10.44

GC content: 62.9

Gene sequence:

>1833_bases
ATGTCCGCATTCACTGGCTTGTCGCTGGTCATCGAACCCAACGATCTGCTTGAGCGTCTAGACGCCCCGGAACTGATCCT
CGTGGATCTGACCAGCAGCGCTCGCTACGAAGCCGGGCACATTCGCGGTGCCCGCTTCGTCGATCCGAAACGTACACAAC
TGGGCACGCCTCCTGCCCCCGGCCTGCTGCCCGACACGGCCGGTCTTGAGCAAGTGTTCGGCGAGCTGGGCCACAACCCT
GACGCTGTCTATGTCGTCTACGATGACGAAGGCGGCGGCTGGGCCGGGCGTTTCATCTGGCTGCTGGATGTCATCGGCCA
CAGCCGTTATCACTATCTGGACGGTGGACTGCTGGCCTGGGAAGCGCAATTGCTGCCGCTGAGCACCGACGTGCCGCCTG
CTGCCGATACTCCGGTAACGCTGACGCTGCACGATGAACCTACCGCCACGCGCGAGTACCTGCAAAGCCGTCTGGGCGCC
GCCGATCTGGCGATCTGGGATGCCCGCGCGCCGACCGAGTATTCGGGCGAAAAAGTGGTCGCGGCCAAAGGCGGGCACAT
ACCCGGCGCCGTCAATTTCGAGTGGACGGCGGGGATGGACAAGGCGCGCAACCTGCGTATTCGCCAGGACATGCCGGAGA
TCCTCCGCGACCTGGGCATCACGCCCGACAAGGAAATCATCACGCACTGTCAGACCCATCACCGCTCGGGCTTCACCTAT
CTGGTGGCCAAGGCGCTTGGCTATCCAAGGGTCAAGGCATATGCCGGCTCGTGGGGCGAATGGGGCAATCATCCGGATAC
ACCGGTAGAAGTACCGAATGTGGCCGCCGCGCCCGTCGAGGCAGTCGAGGTTGCGCAACCCGCAGAGCCTGCCCAGCCAG
CCCCGGCCGAAACCGTCGAACCGGTCCGCGCCACCGAACCGGGACGGACCTCACAGAAATATTCAGGACACTCATCCTCA
GGACCTTCAATGAAAGACCGCTTGTTCATCATCAGCCAGTACCTGCTGCCGCACCACCTGCTGTCCCGACTGGCAGGCTG
CGTTGCCGAATGCCGCGTACGCTGGTTCAAAAACGCTTTCACTGCGTGGTTTGCCCGCAGTTATCAGGTGGACATGTCGC
AGGCACTGGTCGAAGACCTGACGTCCTACGAGCACTTCAACGCGTTCTTCACCCGCGCATTGAAAGCCGACGCCCGCCCG
CTCGATGCCACGCCGGGCGCGATTCTCTCGCCGGCCGACGGTGCCATCAGCCAGTTGGGCCCTATCGACCACGGCCGGAT
CTTCCAGGCCAAGGGCCACAGTTTCAGCGTACTGGAACTGCTCGGCGGCGACCCCAAGCTGTCGGCGCCGTTCATGGGCG
GCGAATTCGCGACCGTTTACCTGTCGCCGAAGGACTATCACCGCGTACACATGCCACTGGCCGGCACGCTGCGTGAAATG
GTCTACGTACCGGGCCGCATCTTCTCGGTCAACCAGACCACGGCTGAAAACGTACCCGAGCTGTTCGCCCGTAACGAGCG
AGTGGTCTGCCTGTTCGATACCGAGCGCGGGCCAATGGCAGTGGTACTGGTGGGCGCGATGATCGTGGCGTCTGTCGAAA
CGGTATGGGCCGGACTGGTCACACCGCCCAAGCGTGAATTGAAGACGTTCAGCTACGACGAAGCGGCGCGTGCGCCGATC
CACCTGGAAAAAGGTGCCGAGATGGGTCGGTTCAAGCTGGGCTCTACCGCCATCGTGCTGTTCGGTCCAGGTCAGGTGAA
ATGGGCCGAACAACTGACGGCCGGCTCCAAGGTTCAAATGGGCCAGGCACTGGCCGTTCCGGCACAGGCATGA

Upstream 100 bases:

>100_bases
AACCGCGCAATGTATTGAACGGGCACTGGGCATCTTTAGTCATCGCAAAGCCTGAGGCCTGGCGTACAATTCGCCCCTTT
CCTTTCATCGGAGGCTGCAA

Downstream 100 bases:

>100_bases
TCGCGACCTGAGCCTCGATGCATGAGTGCCCGATGATGGATATTGGCACTCATGCAGCATGCCACCGGACGATAATGGCC
TCCGGCCATAATTGCTGCGA

Product: bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 610; Mature: 609

Protein sequence:

>610_residues
MSAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAPGLLPDTAGLEQVFGELGHNP
DAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAWEAQLLPLSTDVPPAADTPVTLTLHDEPTATREYLQSRLGA
ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTY
LVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPNVAAAPVEAVEVAQPAEPAQPAPAETVEPVRATEPGRTSQKYSGHSSS
GPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAFTAWFARSYQVDMSQALVEDLTSYEHFNAFFTRALKADARP
LDATPGAILSPADGAISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREM
VYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLVTPPKRELKTFSYDEAARAPI
HLEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQMGQALAVPAQA

Sequences:

>Translated_610_residues
MSAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAPGLLPDTAGLEQVFGELGHNP
DAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAWEAQLLPLSTDVPPAADTPVTLTLHDEPTATREYLQSRLGA
ADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTY
LVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPNVAAAPVEAVEVAQPAEPAQPAPAETVEPVRATEPGRTSQKYSGHSSS
GPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAFTAWFARSYQVDMSQALVEDLTSYEHFNAFFTRALKADARP
LDATPGAILSPADGAISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREM
VYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLVTPPKRELKTFSYDEAARAPI
HLEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQMGQALAVPAQA
>Mature_609_residues
SAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAPGLLPDTAGLEQVFGELGHNPD
AVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAWEAQLLPLSTDVPPAADTPVTLTLHDEPTATREYLQSRLGAA
DLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTYL
VAKALGYPRVKAYAGSWGEWGNHPDTPVEVPNVAAAPVEAVEVAQPAEPAQPAPAETVEPVRATEPGRTSQKYSGHSSSG
PSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAFTAWFARSYQVDMSQALVEDLTSYEHFNAFFTRALKADARPL
DATPGAILSPADGAISQLGPIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREMV
YVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLVTPPKRELKTFSYDEAARAPIH
LEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQMGQALAVPAQA

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=299, Percent_Identity=31.438127090301, Blast_Score=126, Evalue=6e-29,
Organism=Homo sapiens, GI194473668, Length=252, Percent_Identity=29.3650793650794, Blast_Score=87, Evalue=7e-17,
Organism=Homo sapiens, GI61835204, Length=252, Percent_Identity=29.3650793650794, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI194473681, Length=252, Percent_Identity=29.3650793650794, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI17402865, Length=234, Percent_Identity=26.4957264957265, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1790604, Length=280, Percent_Identity=52.8571428571429, Blast_Score=298, Evalue=1e-81,
Organism=Escherichia coli, GI87082121, Length=270, Percent_Identity=30.3703703703704, Blast_Score=100, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI71980843, Length=283, Percent_Identity=31.4487632508834, Blast_Score=125, Evalue=7e-29,
Organism=Caenorhabditis elegans, GI71980840, Length=283, Percent_Identity=31.4487632508834, Blast_Score=124, Evalue=1e-28,
Organism=Saccharomyces cerevisiae, GI6321609, Length=222, Percent_Identity=27.9279279279279, Blast_Score=92, Evalue=2e-19,
Organism=Saccharomyces cerevisiae, GI6324160, Length=162, Percent_Identity=35.1851851851852, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24649526, Length=309, Percent_Identity=30.42071197411, Blast_Score=120, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24649528, Length=309, Percent_Identity=30.42071197411, Blast_Score=120, Evalue=3e-27,
Organism=Drosophila melanogaster, GI24649524, Length=309, Percent_Identity=30.42071197411, Blast_Score=120, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 66319; Mature: 66188

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: PS00683 RHODANESE_2 ; PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAP
CCCCCCCEEEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
GLLPDTAGLEQVFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAW
CCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCEEEE
EAQLLPLSTDVPPAADTPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVV
EEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEE
AAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTY
EECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
LVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPNVAAAPVEAVEVAQPAEPAQPAPAETVE
HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHCC
PVRATEPGRTSQKYSGHSSSGPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAWFARSYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDATPGAILSPADGAISQLG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHCC
PIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREM
CCCCCEEEEECCCCEEEHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHH
VYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLV
HCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCC
TPPKRELKTFSYDEAARAPIHLEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQM
CCCHHHHCCCCCCHHHCCCEEECCCCCCCCEEECCEEEEEECCCCCHHHHHHCCCCCEEC
GQALAVPAQA
CCEEECCCCC
>Mature Secondary Structure 
SAFTGLSLVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGTPPAP
CCCCCCEEEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCCCC
GLLPDTAGLEQVFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSRYHYLDGGLLAW
CCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCEEEE
EAQLLPLSTDVPPAADTPVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVV
EEEEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCEEE
AAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGITPDKEIITHCQTHHRSGFTY
EECCCCCCCCEEEEECCCCCHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHH
LVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPNVAAAPVEAVEVAQPAEPAQPAPAETVE
HHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHCC
PVRATEPGRTSQKYSGHSSSGPSMKDRLFIISQYLLPHHLLSRLAGCVAECRVRWFKNAF
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAWFARSYQVDMSQALVEDLTSYEHFNAFFTRALKADARPLDATPGAILSPADGAISQLG
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCHHHHCC
PIDHGRIFQAKGHSFSVLELLGGDPKLSAPFMGGEFATVYLSPKDYHRVHMPLAGTLREM
CCCCCEEEEECCCCEEEHHHHCCCCCCCCCCCCCCEEEEEECCCCCCEEECCHHHHHHHH
VYVPGRIFSVNQTTAENVPELFARNERVVCLFDTERGPMAVVLVGAMIVASVETVWAGLV
HCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCEEHHHHHHHHHHHHHHHHHHCC
TPPKRELKTFSYDEAARAPIHLEKGAEMGRFKLGSTAIVLFGPGQVKWAEQLTAGSKVQM
CCCHHHHCCCCCCHHHCCCEEECCCCCCCCEEECCEEEEEECCCCCHHHHHHCCCCCEEC
GQALAVPAQA
CCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA