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The map label for this gene is ydiU [C]

Identifier: 66043761

GI number: 66043761

Start: 535554

End: 537017

Strand: Reverse

Name: ydiU [C]

Synonym: Psyr_0494

Alternate gene names: 66043761

Gene position: 537017-535554 (Counterclockwise)

Preceding gene: 66043762

Following gene: 66043754

Centisome position: 8.81

GC content: 61.48

Gene sequence:

>1464_bases
TTGAAAGCACTCGACGAACTCATTTTCGATAACCGCTTTGCCCGTCTGGGCGATGCGTTCTCCACTTCCGTGCTGCCTGA
GCCCATCGATGCGCCGCAGCTGGTAGTAGCCAGCCAGTCAGCGCTGGCGCTGCTGGACCTGGCGCCTGAGCAGGCCGATC
TGCCGCTGTTCGCGGAAATCTTCAGTGGCCACAAACTGTGGTCGGAGGCAGAACCTCGGGCGATGGTGTATTCCGGGCAT
CAGTTTGGCTCCTACAACCCGCGCCTGGGCGACGGTCGCGGGCTGCTGCTCGGCGAGGTCTACAACGATGCAGGTGAGCA
CTGGGACCTGCACCTCAAGGGCGCAGGCCGCACGCCGTATTCACGCATGGGTGACGGGCGCGCCGTACTGCGCTCGTCGA
TCCGCGAGTTTCTGGCCTCCGAAGTCCTGCACGCACTGGGCATCCCCAGCAGCCGCGCGGGGTGTGTGGTCAGCTCCAGC
ACGCCGGTATGGCGCGAAACCCAGGAGCATGCAGCCATGGTGCTGCGCTTGGCGCAGAGCCATGTGCGCTTCGGCAGTCT
GGAATACTTCTTCTACACCAAGCAGCCAGAGCAGTTGAAGACCCTCGCCGAACATGTGCTGACGATGCATTACCCGCACT
GCCAGGAGCAGCCGGAGCCGTATCTGGCGATGTTCCGGGAAATCGTCGAGCGCAACGCAGAGCTGATTGCCAAGTGGCAG
GCCTACGGCTTCTGCCATGGTGTGATGAACACCGACAACATGTCGATTCTGGGCATTACCTTCGACTTCGGACCATTCGC
GTTTCTGGATGATTTCGATGAGCACTTCATCTGCAACCACTCCGACCATGAAGGCCGTTATTCCTTCAGCAATCAGGTGC
CTATCGCGCAATGGAACCTCAGCGCACTGGCACAGGCGCTGACCCCTTTCATCAGCGTGGACGCGTTGCGCGAGGCGATC
GGTTTGTTCCTGCCGCTGTATCAGGCGCACTACCTGGACCTGATGCGCCGTCGACTGGGCCTGACCGTCGCCCATGAGCA
GGACGAACAACTGGTCAGCCAGTTGCTGAAGCTGATGCAGAACAGTGGCGTGGATTACACCCTGTTCTTCCGCCGCCTGG
GTGACCAGCCAGCCGCCGAGGCGCTGCGCACGTTGCGCGACGACTTTGTCGATATCAAGGGCTTCGATGGCTGGGCGCAA
GCGTATCAGGCGCGTATTGCCCTTGAGAACAACGGCACCGAGCAGGAGCGTCAGACCCGCATGCATGCGGTCAATCCGCT
GTACATCCTGCGCAACTACCTGGCACAGAACGCCATCGCTGCGGCGGAAAAAGGCGACTACGCAGAAGTCCGCCGCCTGC
ATCAGGTGCTCTGCACCCCCTTCACCGAACAACCCGGCATGCAAGGCTACGCCCAACGGCCGCCGGACTGGGGCAAGCAC
CTGGAAATCAGCTGTTCGTCGTGA

Upstream 100 bases:

>100_bases
GACCCGGTCTACGGGTTCTGACCGTTGCAACACGCCCGACGAGCCAGGCAGGCCGCCGCTTCGTTGAAAGCCTGAAATTC
CCCTCTGGAGGCGATACGCT

Downstream 100 bases:

>100_bases
GGCGTTTGACCCCTATCGTGGCCCTGCTCCAGCGTAGGCATGCCGTTCTGGACGCTCTCCTGTAACTATCGTGCGGCGCT
CCGCGTCGCATGCCGTTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 487; Mature: 487

Protein sequence:

>487_residues
MKALDELIFDNRFARLGDAFSTSVLPEPIDAPQLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGH
QFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGCVVSSS
TPVWRETQEHAAMVLRLAQSHVRFGSLEYFFYTKQPEQLKTLAEHVLTMHYPHCQEQPEPYLAMFREIVERNAELIAKWQ
AYGFCHGVMNTDNMSILGITFDFGPFAFLDDFDEHFICNHSDHEGRYSFSNQVPIAQWNLSALAQALTPFISVDALREAI
GLFLPLYQAHYLDLMRRRLGLTVAHEQDEQLVSQLLKLMQNSGVDYTLFFRRLGDQPAAEALRTLRDDFVDIKGFDGWAQ
AYQARIALENNGTEQERQTRMHAVNPLYILRNYLAQNAIAAAEKGDYAEVRRLHQVLCTPFTEQPGMQGYAQRPPDWGKH
LEISCSS

Sequences:

>Translated_487_residues
MKALDELIFDNRFARLGDAFSTSVLPEPIDAPQLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGH
QFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGCVVSSS
TPVWRETQEHAAMVLRLAQSHVRFGSLEYFFYTKQPEQLKTLAEHVLTMHYPHCQEQPEPYLAMFREIVERNAELIAKWQ
AYGFCHGVMNTDNMSILGITFDFGPFAFLDDFDEHFICNHSDHEGRYSFSNQVPIAQWNLSALAQALTPFISVDALREAI
GLFLPLYQAHYLDLMRRRLGLTVAHEQDEQLVSQLLKLMQNSGVDYTLFFRRLGDQPAAEALRTLRDDFVDIKGFDGWAQ
AYQARIALENNGTEQERQTRMHAVNPLYILRNYLAQNAIAAAEKGDYAEVRRLHQVLCTPFTEQPGMQGYAQRPPDWGKH
LEISCSS
>Mature_487_residues
MKALDELIFDNRFARLGDAFSTSVLPEPIDAPQLVVASQSALALLDLAPEQADLPLFAEIFSGHKLWSEAEPRAMVYSGH
QFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPYSRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGCVVSSS
TPVWRETQEHAAMVLRLAQSHVRFGSLEYFFYTKQPEQLKTLAEHVLTMHYPHCQEQPEPYLAMFREIVERNAELIAKWQ
AYGFCHGVMNTDNMSILGITFDFGPFAFLDDFDEHFICNHSDHEGRYSFSNQVPIAQWNLSALAQALTPFISVDALREAI
GLFLPLYQAHYLDLMRRRLGLTVAHEQDEQLVSQLLKLMQNSGVDYTLFFRRLGDQPAAEALRTLRDDFVDIKGFDGWAQ
AYQARIALENNGTEQERQTRMHAVNPLYILRNYLAQNAIAAAEKGDYAEVRRLHQVLCTPFTEQPGMQGYAQRPPDWGKH
LEISCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=384, Percent_Identity=44.7916666666667, Blast_Score=299, Evalue=4e-81,
Organism=Escherichia coli, GI1787999, Length=469, Percent_Identity=47.9744136460554, Blast_Score=447, Evalue=1e-127,
Organism=Saccharomyces cerevisiae, GI6325034, Length=435, Percent_Identity=33.7931034482759, Blast_Score=206, Evalue=8e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54981; Mature: 54981

Theoretical pI: Translated: 5.65; Mature: 5.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALDELIFDNRFARLGDAFSTSVLPEPIDAPQLVVASQSALALLDLAPEQADLPLFAEI
CCHHHHHHHCCHHHHHCCHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCCHHHHH
FSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPY
HCCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCH
SRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGCVVSSSTPVWRETQEHAAMVLRLAQS
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
HVRFGSLEYFFYTKQPEQLKTLAEHVLTMHYPHCQEQPEPYLAMFREIVERNAELIAKWQ
HHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
AYGFCHGVMNTDNMSILGITFDFGPFAFLDDFDEHFICNHSDHEGRYSFSNQVPIAQWNL
HHHEEECCCCCCCEEEEEEEECCCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCEEECCH
SALAQALTPFISVDALREAIGLFLPLYQAHYLDLMRRRLGLTVAHEQDEQLVSQLLKLMQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHH
NSGVDYTLFFRRLGDQPAAEALRTLRDDFVDIKGFDGWAQAYQARIALENNGTEQERQTR
HCCCCEEHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHH
MHAVNPLYILRNYLAQNAIAAAEKGDYAEVRRLHQVLCTPFTEQPGMQGYAQRPPDWGKH
HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
LEISCSS
EEEEECC
>Mature Secondary Structure
MKALDELIFDNRFARLGDAFSTSVLPEPIDAPQLVVASQSALALLDLAPEQADLPLFAEI
CCHHHHHHHCCHHHHHCCHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCCCCCCCHHHHH
FSGHKLWSEAEPRAMVYSGHQFGSYNPRLGDGRGLLLGEVYNDAGEHWDLHLKGAGRTPY
HCCCHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEEHHHHHCCCCCEEEEEECCCCCCH
SRMGDGRAVLRSSIREFLASEVLHALGIPSSRAGCVVSSSTPVWRETQEHAAMVLRLAQS
HHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHH
HVRFGSLEYFFYTKQPEQLKTLAEHVLTMHYPHCQEQPEPYLAMFREIVERNAELIAKWQ
HHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHH
AYGFCHGVMNTDNMSILGITFDFGPFAFLDDFDEHFICNHSDHEGRYSFSNQVPIAQWNL
HHHEEECCCCCCCEEEEEEEECCCCCHHHHCCCCCEECCCCCCCCCCCCCCCCCEEECCH
SALAQALTPFISVDALREAIGLFLPLYQAHYLDLMRRRLGLTVAHEQDEQLVSQLLKLMQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHHHH
NSGVDYTLFFRRLGDQPAAEALRTLRDDFVDIKGFDGWAQAYQARIALENNGTEQERQTR
HCCCCEEHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHH
MHAVNPLYILRNYLAQNAIAAAEKGDYAEVRRLHQVLCTPFTEQPGMQGYAQRPPDWGKH
HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCE
LEISCSS
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA