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The map label for this gene is exbD [H]

Identifier: 66043474

GI number: 66043474

Start: 219306

End: 219731

Strand: Reverse

Name: exbD [H]

Synonym: Psyr_0204

Alternate gene names: 66043474

Gene position: 219731-219306 (Counterclockwise)

Preceding gene: 66043475

Following gene: 66043473

Centisome position: 3.61

GC content: 58.45

Gene sequence:

>426_bases
GTGGGCCTGCATCTTAACGAAGGCGGCGACGATCTCGCCGAGAACCATGAAATCAACGTGACGCCGTTCATCGACGTCAT
GCTGGTGCTGCTGATCATCTTCATGGTGGCTGCACCGCTGGCGACCGTGGACATCAAGGTCGACCTGCCAGCGTCCACCG
CCACACCGCAGCCCAGACCCGAGAAACCGATCTTTCTCAGCGTGAAAACCGACAAGAGCCTGTACCTGGGCGAGGAGAAG
GTTGCTCGCGAGCAGATCGGTCAGGTGCTGGACGCCCGCACCAAGGGCAAGAAAGACACCACGATCTTCTTCCAGGCCGA
CAAGGGCGTGGATTACGGTGATCTGATGGAAGTCATGAACACGCTTCGGGGTGCGGGTTACCTGAAGGTCGGTCTGGTAG
GTCTTGAGACGGCTGGTAAGAAATGA

Upstream 100 bases:

>100_bases
GGCACACGTCCTGCTGCTGGTCAGCCGCGATCTGGATCATCTGCCAGAGCCGTCCGAGCGCAATCAACAACAACCGCACA
TGGTCAAGGTGGGCTAAAAC

Downstream 100 bases:

>100_bases
TCAGTACGCGCCAAAAACTGACGCGCTATAGCGGTAGTCTGTTGTTGGTGCTGGCCGTGCACGCCATCGCAATCATTGTT
GCCGTTCGCTGGCCTGCCCC

Product: biopolymer transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MGLHLNEGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTATPQPRPEKPIFLSVKTDKSLYLGEEK
VAREQIGQVLDARTKGKKDTTIFFQADKGVDYGDLMEVMNTLRGAGYLKVGLVGLETAGKK

Sequences:

>Translated_141_residues
MGLHLNEGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTATPQPRPEKPIFLSVKTDKSLYLGEEK
VAREQIGQVLDARTKGKKDTTIFFQADKGVDYGDLMEVMNTLRGAGYLKVGLVGLETAGKK
>Mature_140_residues
GLHLNEGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTATPQPRPEKPIFLSVKTDKSLYLGEEKV
AREQIGQVLDARTKGKKDTTIFFQADKGVDYGDLMEVMNTLRGAGYLKVGLVGLETAGKK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=69.5035460992908, Blast_Score=201, Evalue=2e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15327; Mature: 15196

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLHLNEGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTATPQPRP
CCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPIFLSVKTDKSLYLGEEKVAREQIGQVLDARTKGKKDTTIFFQADKGVDYGDLMEVMN
CCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
TLRGAGYLKVGLVGLETAGKK
HHCCCCEEEEEEEEECCCCCC
>Mature Secondary Structure 
GLHLNEGGDDLAENHEINVTPFIDVMLVLLIIFMVAAPLATVDIKVDLPASTATPQPRP
CCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC
EKPIFLSVKTDKSLYLGEEKVAREQIGQVLDARTKGKKDTTIFFQADKGVDYGDLMEVMN
CCCEEEEEECCCCEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHH
TLRGAGYLKVGLVGLETAGKK
HHCCCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]