Click here to switch to the map view.

The map label for this gene is tonB [H]

Identifier: 66043473

GI number: 66043473

Start: 218563

End: 219309

Strand: Reverse

Name: tonB [H]

Synonym: Psyr_0203

Alternate gene names: 66043473

Gene position: 219309-218563 (Counterclockwise)

Preceding gene: 66043474

Following gene: 66043472

Centisome position: 3.6

GC content: 61.98

Gene sequence:

>747_bases
ATGATCAGTACGCGCCAAAAACTGACGCGCTATAGCGGTAGTCTGTTGTTGGTGCTGGCCGTGCACGCCATCGCAATCAT
TGTTGCCGTTCGCTGGCCTGCCCCTCAGCCTGTCGAATTGCCACCGGCCGCCATGATGGTCGAACTTGCGCCAGTGCCCG
AACCCGCTCCGCCGCCACCGCCCAAGGTCGTTCAGCCGCCCCCGCCGCCAGCCCCGGAGGAGCCGACACCGGTGCCGGAA
GTCGTGCAGGCGCCGAAGCCGGAAATCGTCGTGCCCAAGAAGGTCGAGAAGCCCAAGCCCAAACCGCAGCCGCCAAAGCC
GCAGAAGAAGCCTGAGCCGCCCAAGGAAAAGCCTGCCGACGAAAAGCCGGTCGATACACCGCCGACCACGGCGCAACCGG
CAAAGCCGGTGGCTCCCAAGCCTGCTCCTGCACCTTCGCCACCCAGCAACGCATTGCCGAATTGGCAGGGCGATTTGCTC
GGTCATCTGAGCAAGTACAAGAAGTACCCTGAGGATGCACGCCGTCGTGGCATGCAAGGTGTTGCTCGCTTGCGCTTCGT
GGTGGACGCTGACGGCAACGTGCTTTCCTACTCGATTGCCAACAGTTCAGGCAGCCCGGCGCTGGATCGAGCGACCATGG
AAATGATCCGTCGCGCTCAACCGTTGCCCAAGCCGCCGAAGGAAATCCTCAACAACGGCACTATCGAAATCCTCGCACCG
TTCGTTTATTCGCTGGATAAACGCTGA

Upstream 100 bases:

>100_bases
AGGGCGTGGATTACGGTGATCTGATGGAAGTCATGAACACGCTTCGGGGTGCGGGTTACCTGAAGGTCGGTCTGGTAGGT
CTTGAGACGGCTGGTAAGAA

Downstream 100 bases:

>100_bases
ATTGTACTTTTGTTACCCATAAGTACTTCTGATAACGTGCGTCTATCGATCGCACCCGCTATGCTGGGGTCGCAACTTCA
TGGACGCACGTTATGACTCT

Product: TonB, C-terminal

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MISTRQKLTRYSGSLLLVLAVHAIAIIVAVRWPAPQPVELPPAAMMVELAPVPEPAPPPPPKVVQPPPPPAPEEPTPVPE
VVQAPKPEIVVPKKVEKPKPKPQPPKPQKKPEPPKEKPADEKPVDTPPTTAQPAKPVAPKPAPAPSPPSNALPNWQGDLL
GHLSKYKKYPEDARRRGMQGVARLRFVVDADGNVLSYSIANSSGSPALDRATMEMIRRAQPLPKPPKEILNNGTIEILAP
FVYSLDKR

Sequences:

>Translated_248_residues
MISTRQKLTRYSGSLLLVLAVHAIAIIVAVRWPAPQPVELPPAAMMVELAPVPEPAPPPPPKVVQPPPPPAPEEPTPVPE
VVQAPKPEIVVPKKVEKPKPKPQPPKPQKKPEPPKEKPADEKPVDTPPTTAQPAKPVAPKPAPAPSPPSNALPNWQGDLL
GHLSKYKKYPEDARRRGMQGVARLRFVVDADGNVLSYSIANSSGSPALDRATMEMIRRAQPLPKPPKEILNNGTIEILAP
FVYSLDKR
>Mature_248_residues
MISTRQKLTRYSGSLLLVLAVHAIAIIVAVRWPAPQPVELPPAAMMVELAPVPEPAPPPPPKVVQPPPPPAPEEPTPVPE
VVQAPKPEIVVPKKVEKPKPKPQPPKPQKKPEPPKEKPADEKPVDTPPTTAQPAKPVAPKPAPAPSPPSNALPNWQGDLL
GHLSKYKKYPEDARRRGMQGVARLRFVVDADGNVLSYSIANSSGSPALDRATMEMIRRAQPLPKPPKEILNNGTIEILAP
FVYSLDKR

Specific function: Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requirin

COG id: COG0810

COG function: function code M; Periplasmic protein TonB, links inner and outer membranes

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein; Periplasmic side [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006260 [H]

Pfam domain/function: PF03544 TonB [H]

EC number: NA

Molecular weight: Translated: 26832; Mature: 26832

Theoretical pI: Translated: 10.42; Mature: 10.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTRQKLTRYSGSLLLVLAVHAIAIIVAVRWPAPQPVELPPAAMMVELAPVPEPAPPPP
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCC
PKVVQPPPPPAPEEPTPVPEVVQAPKPEIVVPKKVEKPKPKPQPPKPQKKPEPPKEKPAD
CCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EKPVDTPPTTAQPAKPVAPKPAPAPSPPSNALPNWQGDLLGHLSKYKKYPEDARRRGMQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
VARLRFVVDADGNVLSYSIANSSGSPALDRATMEMIRRAQPLPKPPKEILNNGTIEILAP
HHHEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEHHH
FVYSLDKR
HHHHHCCC
>Mature Secondary Structure
MISTRQKLTRYSGSLLLVLAVHAIAIIVAVRWPAPQPVELPPAAMMVELAPVPEPAPPPP
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCCCCCC
PKVVQPPPPPAPEEPTPVPEVVQAPKPEIVVPKKVEKPKPKPQPPKPQKKPEPPKEKPAD
CCCCCCCCCCCCCCCCCCHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
EKPVDTPPTTAQPAKPVAPKPAPAPSPPSNALPNWQGDLLGHLSKYKKYPEDARRRGMQG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
VARLRFVVDADGNVLSYSIANSSGSPALDRATMEMIRRAQPLPKPPKEILNNGTIEILAP
HHHEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCCEEEHHH
FVYSLDKR
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]