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The map label for this gene is sufC [H]

Identifier: 62390445

GI number: 62390445

Start: 1650831

End: 1651589

Strand: Reverse

Name: sufC [H]

Synonym: cg1762

Alternate gene names: 62390445

Gene position: 1651589-1650831 (Counterclockwise)

Preceding gene: 62390446

Following gene: 62390444

Centisome position: 50.31

GC content: 56.39

Gene sequence:

>759_bases
ATGAGCACTCTTGAAATCCGTAACCTGCACGCACAGGTCCTGCCGTCCGATGAGTCCGCTGAGCCTAAGGAAATCCTCAA
GGGCGTCAACCTCACCATCAACTCTGGTGAGATCCACGCCATCATGGGCCCTAACGGTTCCGGCAAGTCCACTCTTGCTT
ACACCCTTGGTGGACACCCACGCTACGAGGTAACCGCAGGCGAGGTCCTCCTCGACGGCGAGAACATCCTGGAGATGGAA
GTTGATGAGCGTGCACGCGCTGGTCTCTTCCTGGCCATGCAGTATCCAACTGAAATCCCTGGCGTTTCCGTTGCTAACTT
CCTGCGTTCCGCAGCGACCGCAATCCGCGGCGAGGCTCCTAAGCTTCGCGAGTGGGTTAAGGAAGTCCGCACCGCTCAGG
AAGCTCTGGCAATTGACCCTGAGTTCTCCAACCGCTCAGTCAACGAAGGTTTCTCCGGTGGCGAGAAGAAGCGCCACGAG
GTTCTGCAGCTTGATCTGCTGAAGCCAAAGTTCGCGATCATGGATGAGACCGACTCCGGCCTTGACGTGGATGCACTGCG
CATTGTTTCCGAGGGCATCAACTCCTACAAGCAGGAGACCGAAGGTGGCATCTTGATGATCACCCACTACAAGCGCATCC
TCAACTACGTTAAGCCTGACTTCATTCACGTTTTCGCGAATGGCCAGATTGTGACCACCGGTGGCGCTGAGCTTGCTGAC
AAGCTCGAGGCTGACGGCTACGACCAGTTCATCAAGTAA

Upstream 100 bases:

>100_bases
GTGGCTAAGCACAGTTACTTGGCCAAGCTGGGCGGCAGAAAAACCGGCCCAGCTAATACTTCAGTTTAAAATTCGCTTCA
ACCCTGAAAGATTGTGACAG

Downstream 100 bases:

>100_bases
CATGTCCGATTTCCTCAATGCAGATGGATCCCTCAATGTGGATAAGGTGCGGGAAGAATTCCCAATCCTGAAGCGCACTG
TTAGGGATGGGAAACCGCTT

Product: Iron-regulated ABC transporter ATPase subunit

Products: NA

Alternate protein names: VEG296 [H]

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MSTLEIRNLHAQVLPSDESAEPKEILKGVNLTINSGEIHAIMGPNGSGKSTLAYTLGGHPRYEVTAGEVLLDGENILEME
VDERARAGLFLAMQYPTEIPGVSVANFLRSAATAIRGEAPKLREWVKEVRTAQEALAIDPEFSNRSVNEGFSGGEKKRHE
VLQLDLLKPKFAIMDETDSGLDVDALRIVSEGINSYKQETEGGILMITHYKRILNYVKPDFIHVFANGQIVTTGGAELAD
KLEADGYDQFIK

Sequences:

>Translated_252_residues
MSTLEIRNLHAQVLPSDESAEPKEILKGVNLTINSGEIHAIMGPNGSGKSTLAYTLGGHPRYEVTAGEVLLDGENILEME
VDERARAGLFLAMQYPTEIPGVSVANFLRSAATAIRGEAPKLREWVKEVRTAQEALAIDPEFSNRSVNEGFSGGEKKRHE
VLQLDLLKPKFAIMDETDSGLDVDALRIVSEGINSYKQETEGGILMITHYKRILNYVKPDFIHVFANGQIVTTGGAELAD
KLEADGYDQFIK
>Mature_251_residues
STLEIRNLHAQVLPSDESAEPKEILKGVNLTINSGEIHAIMGPNGSGKSTLAYTLGGHPRYEVTAGEVLLDGENILEMEV
DERARAGLFLAMQYPTEIPGVSVANFLRSAATAIRGEAPKLREWVKEVRTAQEALAIDPEFSNRSVNEGFSGGEKKRHEV
LQLDLLKPKFAIMDETDSGLDVDALRIVSEGINSYKQETEGGILMITHYKRILNYVKPDFIHVFANGQIVTTGGAELADK
LEADGYDQFIK

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=214, Percent_Identity=27.5700934579439, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI46592964, Length=238, Percent_Identity=30.672268907563, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI46592956, Length=217, Percent_Identity=31.3364055299539, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592978, Length=217, Percent_Identity=31.3364055299539, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592971, Length=238, Percent_Identity=30.672268907563, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592915, Length=217, Percent_Identity=31.3364055299539, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI46592898, Length=217, Percent_Identity=31.3364055299539, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI9961252, Length=215, Percent_Identity=26.046511627907, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4505771, Length=215, Percent_Identity=26.046511627907, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787972, Length=248, Percent_Identity=46.7741935483871, Blast_Score=224, Evalue=3e-60,
Organism=Escherichia coli, GI87081709, Length=215, Percent_Identity=25.5813953488372, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1787029, Length=169, Percent_Identity=31.3609467455621, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787500, Length=223, Percent_Identity=29.5964125560538, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787370, Length=188, Percent_Identity=25, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790162, Length=194, Percent_Identity=28.8659793814433, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788506, Length=215, Percent_Identity=25.5813953488372, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789593, Length=217, Percent_Identity=29.4930875576037, Blast_Score=63, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=222, Percent_Identity=29.7297297297297, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=222, Percent_Identity=29.2792792792793, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193211015, Length=222, Percent_Identity=29.2792792792793, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI193209708, Length=255, Percent_Identity=31.3725490196078, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17541710, Length=219, Percent_Identity=28.310502283105, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=29.2237442922374, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=218, Percent_Identity=27.5229357798165, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=218, Percent_Identity=27.5229357798165, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=223, Percent_Identity=28.6995515695067, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 27641; Mature: 27509

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLEIRNLHAQVLPSDESAEPKEILKGVNLTINSGEIHAIMGPNGSGKSTLAYTLGGHP
CCCCEEECCEEEECCCCCCCCHHHHHCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCC
RYEVTAGEVLLDGENILEMEVDERARAGLFLAMQYPTEIPGVSVANFLRSAATAIRGEAP
CEEEEECEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCH
KLREWVKEVRTAQEALAIDPEFSNRSVNEGFSGGEKKRHEVLQLDLLKPKFAIMDETDSG
HHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCEEEECCCCCC
LDVDALRIVSEGINSYKQETEGGILMITHYKRILNYVKPDFIHVFANGQIVTTGGAELAD
CCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHH
KLEADGYDQFIK
HHCCCCHHHHCC
>Mature Secondary Structure 
STLEIRNLHAQVLPSDESAEPKEILKGVNLTINSGEIHAIMGPNGSGKSTLAYTLGGHP
CCCEEECCEEEECCCCCCCCHHHHHCCCCEEEECCEEEEEECCCCCCCCEEEEEECCCC
RYEVTAGEVLLDGENILEMEVDERARAGLFLAMQYPTEIPGVSVANFLRSAATAIRGEAP
CEEEEECEEEECCCCEEEEECCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCH
KLREWVKEVRTAQEALAIDPEFSNRSVNEGFSGGEKKRHEVLQLDLLKPKFAIMDETDSG
HHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCCHHHHHHHHEECCCCCEEEECCCCCC
LDVDALRIVSEGINSYKQETEGGILMITHYKRILNYVKPDFIHVFANGQIVTTGGAELAD
CCHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCCCEEEEEECCEEEECCCHHHHH
KLEADGYDQFIK
HHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]