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The map label for this gene is ybgJ [H]

Identifier: 62389891

GI number: 62389891

Start: 1058667

End: 1059320

Strand: Reverse

Name: ybgJ [H]

Synonym: cg1140

Alternate gene names: 62389891

Gene position: 1059320-1058667 (Counterclockwise)

Preceding gene: 62389892

Following gene: 62389890

Centisome position: 32.27

GC content: 54.59

Gene sequence:

>654_bases
ATGCTCGTTAGGCCATGTGGTGAGCAAGCAGTCATCATCGATTTGCTTGCTGAAGATGCCGAAGCCGTCCAAGGCAGCAT
CTTGGATGCTGTTCTTGCACTCAACCGCTCTTTGGTGGGCATGCAGGTCCCTGGAATCATCGATACTATTCCCGCTGCGC
AAACACTGTTAGTGACGTTTGACACCAAGCAGATCACCCCGAATCGTTTCGCAGAGATCGTTGATTCAATTGCGCTGACC
CCAGCCGCAAAGGGCGCAGCAGAGCTTACCGACACCATTGAGATTCCCGTGGTCTACGACGGCCCTGATCTAGAAACCGT
AGCTCAACACACAGGTCTGAGCGTGGAGGAAGTTATCGCCACGCATTCTGGCACCGTGTGGACTGCTGCTTTCGGTGGAT
TTGCACCAGGTTTTTACTATCTGATCCCCCAGACTCCCCTGTGGGATATTCCCCGCTTGGAATCGCCACGCACCAAGATT
CCTGCAGGTTCTGTCGCAGTGGCCGGTGAATTCAGCGCTGTGTACCCGCAGCAGTCCCCTGGTGGTTGGCAACTGCTGGG
CACTACTGAGATTCCCATGTGGGATGTGGACCGGTGGCAACCATCGCTTCTCAAGCCCGGTGATTCAGTTCGATTTGTGC
AGGTGAAGAAATGA

Upstream 100 bases:

>100_bases
GACGCCAACTCCATCTGTGTTCATGGGGATAATCCGCAAGCTCTCGCATTGGTGGAGAAAATCGTGACCACCCTTGCAGC
TCATGAGGTTCAGGTTTCCC

Downstream 100 bases:

>100_bases
GCTTCAAAGTAATTTCCACTGGCCCCCAAGCCATCTTCCAAGACCGAGGTCGCTTCGGTTTTGCCAGCGCTGGTGTTGGA
ACCTCAGGATCCTTTGATCG

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MLVRPCGEQAVIIDLLAEDAEAVQGSILDAVLALNRSLVGMQVPGIIDTIPAAQTLLVTFDTKQITPNRFAEIVDSIALT
PAAKGAAELTDTIEIPVVYDGPDLETVAQHTGLSVEEVIATHSGTVWTAAFGGFAPGFYYLIPQTPLWDIPRLESPRTKI
PAGSVAVAGEFSAVYPQQSPGGWQLLGTTEIPMWDVDRWQPSLLKPGDSVRFVQVKK

Sequences:

>Translated_217_residues
MLVRPCGEQAVIIDLLAEDAEAVQGSILDAVLALNRSLVGMQVPGIIDTIPAAQTLLVTFDTKQITPNRFAEIVDSIALT
PAAKGAAELTDTIEIPVVYDGPDLETVAQHTGLSVEEVIATHSGTVWTAAFGGFAPGFYYLIPQTPLWDIPRLESPRTKI
PAGSVAVAGEFSAVYPQQSPGGWQLLGTTEIPMWDVDRWQPSLLKPGDSVRFVQVKK
>Mature_217_residues
MLVRPCGEQAVIIDLLAEDAEAVQGSILDAVLALNRSLVGMQVPGIIDTIPAAQTLLVTFDTKQITPNRFAEIVDSIALT
PAAKGAAELTDTIEIPVVYDGPDLETVAQHTGLSVEEVIATHSGTVWTAAFGGFAPGFYYLIPQTPLWDIPRLESPRTKI
PAGSVAVAGEFSAVYPQQSPGGWQLLGTTEIPMWDVDRWQPSLLKPGDSVRFVQVKK

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=219, Percent_Identity=38.3561643835616, Blast_Score=121, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23262; Mature: 23262

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVRPCGEQAVIIDLLAEDAEAVQGSILDAVLALNRSLVGMQVPGIIDTIPAAQTLLVTF
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCEEEEEEE
DTKQITPNRFAEIVDSIALTPAAKGAAELTDTIEIPVVYDGPDLETVAQHTGLSVEEVIA
CCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEEEECCCCHHHHHHHCCCCHHHHHH
THSGTVWTAAFGGFAPGFYYLIPQTPLWDIPRLESPRTKIPAGSVAVAGEFSAVYPQQSP
HCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCC
GGWQLLGTTEIPMWDVDRWQPSLLKPGDSVRFVQVKK
CCEEEEECCCCCEECCCCCCCHHCCCCCCEEEEEEEC
>Mature Secondary Structure
MLVRPCGEQAVIIDLLAEDAEAVQGSILDAVLALNRSLVGMQVPGIIDTIPAAQTLLVTF
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCEEEEEEE
DTKQITPNRFAEIVDSIALTPAAKGAAELTDTIEIPVVYDGPDLETVAQHTGLSVEEVIA
CCCCCCHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEEEECCCCHHHHHHHCCCCHHHHHH
THSGTVWTAAFGGFAPGFYYLIPQTPLWDIPRLESPRTKIPAGSVAVAGEFSAVYPQQSP
HCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCC
GGWQLLGTTEIPMWDVDRWQPSLLKPGDSVRFVQVKK
CCEEEEECCCCCEECCCCCCCHHCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]