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The map label for this gene is rtxD [H]

Identifier: 59714351

GI number: 59714351

Start: 1323601

End: 1324992

Strand: Reverse

Name: rtxD [H]

Synonym: VF_A1168

Alternate gene names: 59714351

Gene position: 1324992-1323601 (Counterclockwise)

Preceding gene: 59714352

Following gene: 59714350

Centisome position: 99.6

GC content: 35.27

Gene sequence:

>1392_bases
ATGAGTAAGAAAGGATTCAACAAGCTTGATAAACATGAGCTGGATTTTGTTGATGACAAAACGGCGGCTCTACTTTTAAA
CACACCAACTAATGCAAAAATTCTTTTATGGGTAATTGTCGTTTTCTTTGGTATTGCTATTGGTTGGGCTTCTTGGGCCG
AAATTGATAAAGTTACTGTTGGTCAAGGAAAAGTCATTCCTTCTTCACAATTACAAGTTGTACAAAATCTAGAAGGTGGT
CTAGTCAAAGAGATGTTGGTTAAAGAAGGTGACCAAGTTGAAAAAGGACAGCAACTTCTTTTAATTGATGATACTCGCTT
TCGCTCTGATTTTAGAGAACGTAAAAAACAACTGATCAATTTAACTGCAAGCGCTCAACAATTGGCAGCTTCGATGGATA
GTATTCTTATACAGGATATAAATAACCGTAAGCGCTGGAAAGAGTCTGTTATTGTTTATACTGATAAACTAAAATTCGAC
GAAGCGTTTGTAAAAGAAAACCCTATTGTTACTCGTCGTCAGCTTGCAGAATATAAAGCTGATATGAATAACCTTAAAAA
TAGAATTTTTGTTTTTGACCAACAAGTAAGTCAAAAGCAACAAGATCTTGTAGAAATAAAAGCGCGGGTTCGAAATTTAA
AGGCAAGTTATAACCTTGCAAGAAAAGAGTTAGATATAACAAAACCACTAGCAGATGAAGGTGTTGTTCCTCGCATCGAA
CTATTAAAATTACAGCGTCAAGTTAACGATACTAAGCGTGAGTTGACATCAACTGAATTAAAAATTCCTGTCTTAACTTC
TGCAATTCAAGAAACTGTTTTAAACAGAATCGACGCAGCTCTAAAGTTTCGCTCTGAACAGCAAGAAAAATTAAATACTA
CTCAAGATAAATTATCAGCATTAACTGAATCACAGGTCGGATTGAAAGACCGAGTAAACCGTACTGTAGTGTTATCGCCA
GTTACCGGAACCATAAAAAAAATATACATAAATACGGTCGGTGGTGTTATTCAACCTGGTATGGACTTAATTGAAATTGT
ACCCACAGAAGATACGTTATTAATTGAAGCTAAGATTGCACCACAAGATATCGCCTTTCTACGTCCAGGGCTTTCTGCCA
TTGTTAAATTTAGTGCTTATGACTTTACTCGTTATGGTGGTTTGAAAGGTACGTTAGAGCATATCAGTGCTGATACTATT
CAAGATGAAGAGGGAAACAGTTTTTATCTTGTAAGAGTTAGGACTTCACAAGAAGATTTAGAAGAAAAAACACAATTTAA
TATTATTCCAGGTATGACAACCACGGTTGATATTATTACAGGAAAACGTTCTATTTTAGATTACTTAGTGAAACCTATCG
TTCAAGCAAAAGGATCTGCACTAAGAGAGTAA

Upstream 100 bases:

>100_bases
TTCTAATATTCAATGATTTGTTGTAGTTCCTAACGTATAAATACTATATTCTTAATGTAATAGGATTGTTATCTGAATAA
CAACAATTAGGGATATATAA

Downstream 100 bases:

>100_bases
AAGTAAAAGGAGCACATCTCACAATGAGAAGTCGATGGTTAGGAATACCATTCGCCATATTCTCTATCGCTTCTATTGCT
TTAACACAACAAGAAAATAT

Product: putative RTX transport membrane fusion protein RtxD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 463; Mature: 462

Protein sequence:

>463_residues
MSKKGFNKLDKHELDFVDDKTAALLLNTPTNAKILLWVIVVFFGIAIGWASWAEIDKVTVGQGKVIPSSQLQVVQNLEGG
LVKEMLVKEGDQVEKGQQLLLIDDTRFRSDFRERKKQLINLTASAQQLAASMDSILIQDINNRKRWKESVIVYTDKLKFD
EAFVKENPIVTRRQLAEYKADMNNLKNRIFVFDQQVSQKQQDLVEIKARVRNLKASYNLARKELDITKPLADEGVVPRIE
LLKLQRQVNDTKRELTSTELKIPVLTSAIQETVLNRIDAALKFRSEQQEKLNTTQDKLSALTESQVGLKDRVNRTVVLSP
VTGTIKKIYINTVGGVIQPGMDLIEIVPTEDTLLIEAKIAPQDIAFLRPGLSAIVKFSAYDFTRYGGLKGTLEHISADTI
QDEEGNSFYLVRVRTSQEDLEEKTQFNIIPGMTTTVDIITGKRSILDYLVKPIVQAKGSALRE

Sequences:

>Translated_463_residues
MSKKGFNKLDKHELDFVDDKTAALLLNTPTNAKILLWVIVVFFGIAIGWASWAEIDKVTVGQGKVIPSSQLQVVQNLEGG
LVKEMLVKEGDQVEKGQQLLLIDDTRFRSDFRERKKQLINLTASAQQLAASMDSILIQDINNRKRWKESVIVYTDKLKFD
EAFVKENPIVTRRQLAEYKADMNNLKNRIFVFDQQVSQKQQDLVEIKARVRNLKASYNLARKELDITKPLADEGVVPRIE
LLKLQRQVNDTKRELTSTELKIPVLTSAIQETVLNRIDAALKFRSEQQEKLNTTQDKLSALTESQVGLKDRVNRTVVLSP
VTGTIKKIYINTVGGVIQPGMDLIEIVPTEDTLLIEAKIAPQDIAFLRPGLSAIVKFSAYDFTRYGGLKGTLEHISADTI
QDEEGNSFYLVRVRTSQEDLEEKTQFNIIPGMTTTVDIITGKRSILDYLVKPIVQAKGSALRE
>Mature_462_residues
SKKGFNKLDKHELDFVDDKTAALLLNTPTNAKILLWVIVVFFGIAIGWASWAEIDKVTVGQGKVIPSSQLQVVQNLEGGL
VKEMLVKEGDQVEKGQQLLLIDDTRFRSDFRERKKQLINLTASAQQLAASMDSILIQDINNRKRWKESVIVYTDKLKFDE
AFVKENPIVTRRQLAEYKADMNNLKNRIFVFDQQVSQKQQDLVEIKARVRNLKASYNLARKELDITKPLADEGVVPRIEL
LKLQRQVNDTKRELTSTELKIPVLTSAIQETVLNRIDAALKFRSEQQEKLNTTQDKLSALTESQVGLKDRVNRTVVLSPV
TGTIKKIYINTVGGVIQPGMDLIEIVPTEDTLLIEAKIAPQDIAFLRPGLSAIVKFSAYDFTRYGGLKGTLEHISADTIQ
DEEGNSFYLVRVRTSQEDLEEKTQFNIIPGMTTTVDIITGKRSILDYLVKPIVQAKGSALRE

Specific function: Involved in the secretion of alkaline protease [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003997
- InterPro:   IPR006143
- InterPro:   IPR006144
- InterPro:   IPR010129 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 52240; Mature: 52109

Theoretical pI: Translated: 9.43; Mature: 9.43

Prosite motif: PS00543 HLYD_FAMILY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKGFNKLDKHELDFVDDKTAALLLNTPTNAKILLWVIVVFFGIAIGWASWAEIDKVTV
CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEC
GQGKVIPSSQLQVVQNLEGGLVKEMLVKEGDQVEKGQQLLLIDDTRFRSDFRERKKQLIN
CCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
LTASAQQLAASMDSILIQDINNRKRWKESVIVYTDKLKFDEAFVKENPIVTRRQLAEYKA
HHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEECCCCCHHHHCCCCCHHHHHHHHHHH
DMNNLKNRIFVFDQQVSQKQQDLVEIKARVRNLKASYNLARKELDITKPLADEGVVPRIE
HHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
LLKLQRQVNDTKRELTSTELKIPVLTSAIQETVLNRIDAALKFRSEQQEKLNTTQDKLSA
HHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LTESQVGLKDRVNRTVVLSPVTGTIKKIYINTVGGVIQPGMDLIEIVPTEDTLLIEAKIA
HHHHHCCHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHCCCCEEEEECCCCEEEEEEECC
PQDIAFLRPGLSAIVKFSAYDFTRYGGLKGTLEHISADTIQDEEGNSFYLVRVRTSQEDL
CHHHHHHCCCHHHHHHHHHHCHHHHCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCHHHH
EEKTQFNIIPGMTTTVDIITGKRSILDYLVKPIVQAKGSALRE
HHHHCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure 
SKKGFNKLDKHELDFVDDKTAALLLNTPTNAKILLWVIVVFFGIAIGWASWAEIDKVTV
CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCEEEC
GQGKVIPSSQLQVVQNLEGGLVKEMLVKEGDQVEKGQQLLLIDDTRFRSDFRERKKQLIN
CCCCCCCHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHH
LTASAQQLAASMDSILIQDINNRKRWKESVIVYTDKLKFDEAFVKENPIVTRRQLAEYKA
HHHHHHHHHHHHHHHHHHHCCCHHHHHCCEEEEEECCCCCHHHHCCCCCHHHHHHHHHHH
DMNNLKNRIFVFDQQVSQKQQDLVEIKARVRNLKASYNLARKELDITKPLADEGVVPRIE
HHHHHCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
LLKLQRQVNDTKRELTSTELKIPVLTSAIQETVLNRIDAALKFRSEQQEKLNTTQDKLSA
HHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
LTESQVGLKDRVNRTVVLSPVTGTIKKIYINTVGGVIQPGMDLIEIVPTEDTLLIEAKIA
HHHHHCCHHHHCCCEEEEECCCCCHHHHHHHHHCCHHHCCCCEEEEECCCCEEEEEEECC
PQDIAFLRPGLSAIVKFSAYDFTRYGGLKGTLEHISADTIQDEEGNSFYLVRVRTSQEDL
CHHHHHHCCCHHHHHHHHHHCHHHHCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCHHHH
EEKTQFNIIPGMTTTVDIITGKRSILDYLVKPIVQAKGSALRE
HHHHCEEEECCCCEEEEEECCHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1427098; 10984043 [H]