| Definition | Vibrio fischeri ES114 chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_006841 |
| Length | 1,330,333 |
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The map label for this gene is speA [H]
Identifier: 59714023
GI number: 59714023
Start: 947764
End: 949674
Strand: Reverse
Name: speA [H]
Synonym: VF_A0840
Alternate gene names: 59714023
Gene position: 949674-947764 (Counterclockwise)
Preceding gene: 59714025
Following gene: 59714022
Centisome position: 71.39
GC content: 40.5
Gene sequence:
>1911_bases TTGGAACATTCGGTTAATTTGGAACGTATCCGTGCTGAGTATAATGTAAAGCACTGGAGCCAAGGTTTTTATGGTATTGA TGACAATGGTGAGGTTTATGTTTCACCACGCACTGACGCGAGTCACCAAGTTCCACTAAGTCATATTGTGAATCAATTAG AGCAGCGAAATATTGGATTGCCTGCTTTGGTTCGTTTTCCCCAAATCGTTCATCAGCGTGTGCATAATATTTGTAATGCA TTTAACCAAGCGATTGATGAATACCAATATGAAAACCACTATCTTCTTGTTTACCCAATTAAAGTAAACCAGCAAAAAGA AGTGGTTGATGAAATTCTTGCAAGTCAGGCGCAATTAGAGCAGAAGCAATTAGGCTTAGAAGCAGGCAGTAAACCTGAAC TATTGGCCGTATTAGCGCTAGCTCAAAAAGCGAGTTCAGTTATCGTATGTAATGGTTATAAAGACCGTGAGTATGTTCGC TTAGCACTGATTGGTGAGAAACTTGGTCACAGTGTTTTTATCGTTCTAGAAAAATTATCAGAATTAGATTTAGTTCTATC TGAAGCAAAAGCATTAGGTGTTAAACCACGTCTTGGCTTGCGTATTCGTCTTGCTTCTCAAGGTGCAGGGAAATGGCAAG CAAGTGGTGGTGAAAAATCGAAATTTGGTTTGTCTGCTTCTCAGGTATTAACGGTTATTAATCGTCTAAAAGCAGAAGAC CAATTAGATATTTTAGAGCTTGTGCATTTCCATTTAGGCTCACAAATGGCAAACATTCGTGATGTTCGTAATGGGGTGAG TGAAGCGGCTCGTTTTTACTGTGAATTACGTGATATTGGCGCAAAACTAAAATACCTCGATGTGGGTGGTGGTTTAGCGG TAGATTACGATGGAACTCGCAGTCAATCATCTAACTCGATGAACTACGGTTTGGCTGAATACGCGCGTAATATCGTAATG ACGATTGGTGATATTTGTCAGCTTTACTCACAACCAATGCCAGTGATCATCTCTGAATCTGGCCGTTCGTTAACGGCGCA TCACGCGGTGTTAATTACCAATGTTATTGGTACAGAAAGCTATACGCCTGAAGCCATTGAAGCGCCTCGTGCTGATGATC CATTGTTATTACACAATATGTGGCGTAACTTAGAACAGTTAGAAAACGGCAGCGATGATCGTGCGTTAATTGAAATTTAT AACGATACTCAATGTGACGTAGCAGAGGCTCATAATCAGTTTGCGACAGGTATGATTAACCTTCAGCATCGAGCATGGGC AGAGCAAGTATCATTACGTATTAACTATGAGTTAAGCGTAAAAATGAGTACTAAGAACCGCTACCACCGTCCAATCTTGG ATGAGTTAAGTGAGCGTTTAGCGGATAAATTCTTTGTGAATTTCTCTCTGTTCCAATCATTACCAGACGCGTGGGGTATT GATCAGGTGTTCCCTGTGTTACCACTAAGCGGTCTTGATAATGCGGATGAGCATCGTGCTGTTGTATTGGATATTACGTG TGATTCAGACGGTACGATTGATCAATATGTTGATGGTCAAGGTATTGAAACAACGTTACCAGTACCAGCTTGGAACCCTG ATGAGCCTTATTTAATGGGCTTCTTCTTAGTGGGCGCATACCAAGAAATTTTAGGTGATATGCATAACCTATTTGGTGAT ACTCACAGTGTTGTTGTTAATGTTGATGAAAACGGCGAAGCAAATATTGATTACATCAATGAAGGCGATACCGTTGAAGA TATGATGCGTTATGTACATATCGATGTGGATTTGATCCGTCAAAACTACAAAGACATGGTAACAGCGAAAGTTGCAGAAG AAGAACAACAAAGCGTGCTTGAAGAGTTAGAGCAAGGCTTAATGGGTTACACCTATTTGGAAGATTTTTAA
Upstream 100 bases:
>100_bases TGCCGTCGACAACTTGTTAGATTACAAGGATTGTTAGGTTATGCTTCGATATTCCAACGAAGTATTTTCTTTTGATGGCC CTATTGTGTGAGGTCTAGAT
Downstream 100 bases:
>100_bases TGAACGATTTATTCACCAAAAAAGATTATTCATTGTACTCAAATGCAATGACATTTATGCGTCGCCCATTGGTACAAAAC CCAATTGATAACGACGCAGA
Product: arginine decarboxylase
Products: NA
Alternate protein names: ADC [H]
Number of amino acids: Translated: 636; Mature: 636
Protein sequence:
>636_residues MEHSVNLERIRAEYNVKHWSQGFYGIDDNGEVYVSPRTDASHQVPLSHIVNQLEQRNIGLPALVRFPQIVHQRVHNICNA FNQAIDEYQYENHYLLVYPIKVNQQKEVVDEILASQAQLEQKQLGLEAGSKPELLAVLALAQKASSVIVCNGYKDREYVR LALIGEKLGHSVFIVLEKLSELDLVLSEAKALGVKPRLGLRIRLASQGAGKWQASGGEKSKFGLSASQVLTVINRLKAED QLDILELVHFHLGSQMANIRDVRNGVSEAARFYCELRDIGAKLKYLDVGGGLAVDYDGTRSQSSNSMNYGLAEYARNIVM TIGDICQLYSQPMPVIISESGRSLTAHHAVLITNVIGTESYTPEAIEAPRADDPLLLHNMWRNLEQLENGSDDRALIEIY NDTQCDVAEAHNQFATGMINLQHRAWAEQVSLRINYELSVKMSTKNRYHRPILDELSERLADKFFVNFSLFQSLPDAWGI DQVFPVLPLSGLDNADEHRAVVLDITCDSDGTIDQYVDGQGIETTLPVPAWNPDEPYLMGFFLVGAYQEILGDMHNLFGD THSVVVNVDENGEANIDYINEGDTVEDMMRYVHIDVDLIRQNYKDMVTAKVAEEEQQSVLEELEQGLMGYTYLEDF
Sequences:
>Translated_636_residues MEHSVNLERIRAEYNVKHWSQGFYGIDDNGEVYVSPRTDASHQVPLSHIVNQLEQRNIGLPALVRFPQIVHQRVHNICNA FNQAIDEYQYENHYLLVYPIKVNQQKEVVDEILASQAQLEQKQLGLEAGSKPELLAVLALAQKASSVIVCNGYKDREYVR LALIGEKLGHSVFIVLEKLSELDLVLSEAKALGVKPRLGLRIRLASQGAGKWQASGGEKSKFGLSASQVLTVINRLKAED QLDILELVHFHLGSQMANIRDVRNGVSEAARFYCELRDIGAKLKYLDVGGGLAVDYDGTRSQSSNSMNYGLAEYARNIVM TIGDICQLYSQPMPVIISESGRSLTAHHAVLITNVIGTESYTPEAIEAPRADDPLLLHNMWRNLEQLENGSDDRALIEIY NDTQCDVAEAHNQFATGMINLQHRAWAEQVSLRINYELSVKMSTKNRYHRPILDELSERLADKFFVNFSLFQSLPDAWGI DQVFPVLPLSGLDNADEHRAVVLDITCDSDGTIDQYVDGQGIETTLPVPAWNPDEPYLMGFFLVGAYQEILGDMHNLFGD THSVVVNVDENGEANIDYINEGDTVEDMMRYVHIDVDLIRQNYKDMVTAKVAEEEQQSVLEELEQGLMGYTYLEDF >Mature_636_residues MEHSVNLERIRAEYNVKHWSQGFYGIDDNGEVYVSPRTDASHQVPLSHIVNQLEQRNIGLPALVRFPQIVHQRVHNICNA FNQAIDEYQYENHYLLVYPIKVNQQKEVVDEILASQAQLEQKQLGLEAGSKPELLAVLALAQKASSVIVCNGYKDREYVR LALIGEKLGHSVFIVLEKLSELDLVLSEAKALGVKPRLGLRIRLASQGAGKWQASGGEKSKFGLSASQVLTVINRLKAED QLDILELVHFHLGSQMANIRDVRNGVSEAARFYCELRDIGAKLKYLDVGGGLAVDYDGTRSQSSNSMNYGLAEYARNIVM TIGDICQLYSQPMPVIISESGRSLTAHHAVLITNVIGTESYTPEAIEAPRADDPLLLHNMWRNLEQLENGSDDRALIEIY NDTQCDVAEAHNQFATGMINLQHRAWAEQVSLRINYELSVKMSTKNRYHRPILDELSERLADKFFVNFSLFQSLPDAWGI DQVFPVLPLSGLDNADEHRAVVLDITCDSDGTIDQYVDGQGIETTLPVPAWNPDEPYLMGFFLVGAYQEILGDMHNLFGD THSVVVNVDENGEANIDYINEGDTVEDMMRYVHIDVDLIRQNYKDMVTAKVAEEEQQSVLEELEQGLMGYTYLEDF
Specific function: Catalyzes the biosynthesis of agmatine from arginine [H]
COG id: COG1166
COG function: function code E; Arginine decarboxylase (spermidine biosynthesis)
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789307, Length=624, Percent_Identity=53.525641025641, Blast_Score=688, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009006 - InterPro: IPR002985 - InterPro: IPR022643 - InterPro: IPR022644 - InterPro: IPR000183 [H]
Pfam domain/function: PF02784 Orn_Arg_deC_N; PF00278 Orn_DAP_Arg_deC [H]
EC number: =4.1.1.19 [H]
Molecular weight: Translated: 71471; Mature: 71471
Theoretical pI: Translated: 4.55; Mature: 4.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHSVNLERIRAEYNVKHWSQGFYGIDDNGEVYVSPRTDASHQVPLSHIVNQLEQRNIGL CCCCCCHHHHHHHHCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC PALVRFPQIVHQRVHNICNAFNQAIDEYQYENHYLLVYPIKVNQQKEVVDEILASQAQLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH QKQLGLEAGSKPELLAVLALAQKASSVIVCNGYKDREYVRLALIGEKLGHSVFIVLEKLS HHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHEEEEEEHHHHCCHHHHHHHHHH ELDLVLSEAKALGVKPRLGLRIRLASQGAGKWQASGGEKSKFGLSASQVLTVINRLKAED HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC QLDILELVHFHLGSQMANIRDVRNGVSEAARFYCELRDIGAKLKYLDVGGGLAVDYDGTR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCC SQSSNSMNYGLAEYARNIVMTIGDICQLYSQPMPVIISESGRSLTAHHAVLITNVIGTES CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHEEEEHHHCCCC YTPEAIEAPRADDPLLLHNMWRNLEQLENGSDDRALIEIYNDTQCDVAEAHNQFATGMIN CCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCEEE LQHRAWAEQVSLRINYELSVKMSTKNRYHRPILDELSERLADKFFVNFSLFQSLPDAWGI HHHHHHHHHEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC DQVFPVLPLSGLDNADEHRAVVLDITCDSDGTIDQYVDGQGIETTLPVPAWNPDEPYLMG HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHH FFLVGAYQEILGDMHNLFGDTHSVVVNVDENGEANIDYINEGDTVEDMMRYVHIDVDLIR HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH QNYKDMVTAKVAEEEQQSVLEELEQGLMGYTYLEDF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC >Mature Secondary Structure MEHSVNLERIRAEYNVKHWSQGFYGIDDNGEVYVSPRTDASHQVPLSHIVNQLEQRNIGL CCCCCCHHHHHHHHCHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC PALVRFPQIVHQRVHNICNAFNQAIDEYQYENHYLLVYPIKVNQQKEVVDEILASQAQLE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH QKQLGLEAGSKPELLAVLALAQKASSVIVCNGYKDREYVRLALIGEKLGHSVFIVLEKLS HHHHCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHEEEEEEHHHHCCHHHHHHHHHH ELDLVLSEAKALGVKPRLGLRIRLASQGAGKWQASGGEKSKFGLSASQVLTVINRLKAED HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC QLDILELVHFHLGSQMANIRDVRNGVSEAARFYCELRDIGAKLKYLDVGGGLAVDYDGTR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCC SQSSNSMNYGLAEYARNIVMTIGDICQLYSQPMPVIISESGRSLTAHHAVLITNVIGTES CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEHHHHEEEEHHHCCCC YTPEAIEAPRADDPLLLHNMWRNLEQLENGSDDRALIEIYNDTQCDVAEAHNQFATGMIN CCCHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHCEEE LQHRAWAEQVSLRINYELSVKMSTKNRYHRPILDELSERLADKFFVNFSLFQSLPDAWGI HHHHHHHHHEEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC DQVFPVLPLSGLDNADEHRAVVLDITCDSDGTIDQYVDGQGIETTLPVPAWNPDEPYLMG HHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHH FFLVGAYQEILGDMHNLFGDTHSVVVNVDENGEANIDYINEGDTVEDMMRYVHIDVDLIR HHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH QNYKDMVTAKVAEEEQQSVLEELEQGLMGYTYLEDF HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]