Click here to switch to the map view.

The map label for this gene is blc [H]

Identifier: 59714025

GI number: 59714025

Start: 951297

End: 951827

Strand: Reverse

Name: blc [H]

Synonym: VF_A0842

Alternate gene names: 59714025

Gene position: 951827-951297 (Counterclockwise)

Preceding gene: 59714026

Following gene: 59714023

Centisome position: 71.55

GC content: 35.4

Gene sequence:

>531_bases
ATGTTTAAAAGTATAAGTAAAGTGGGTTTTGGGGCTGTTATTTTGATGATGCTCAATGGATGTTTGGGAATGCCAAAAGG
CGTAGAACCCGTTACAGGCTTTGAGTTGAATCGTTATCTTGGTACTTGGTATGAGATAGCTCGTTTGGATCATTCTTTTG
AGGATGGCTTGAGTCAAGTAAGTGCAGAATACTCAATCAATGAGGATGACAGTGTAAAGGTTATTAATCGTGGTTTTTCA
GATCAAGATCAACAATGGAGTGAGGCTTTAGGTAAAGCAAAATTTGTTGATGGAAGTGATGAGGGGTATTTAAAAGTTTC
TTTCTTTGGTCCTTTCTATGGTTCTTATGTTGTTTTTGAGTTAGATAAAGAAAATTATCAATATGCTTTTGTTTCAGGTC
CTGACCTCGATTATTTATGGCTACTTTCACGAACTAAAAAAGTGGACCAAGAAGTGATTGAACGTTTTGTATCAACCGCT
CAATCACTTGGTTTTAAAACAAATGAACTTATCTTTGTTGAGCAAAAATAA

Upstream 100 bases:

>100_bases
AAACCGTAATAAATAAAGGCGCAGTCATATTTAACTATGGGATGATCTTTTTGTTGAAAAGTATCGTAATAACAAAAAGA
TAAGAGTAATGGAGACAATG

Downstream 100 bases:

>100_bases
TAAAGCTAGATATAGCAAATAAAAGAAATGGCACTCATATTAAGTGCCATTTTTTATATGGAAATCTGACGGCATTTTAA
TTAACGAGCTAATTTATGAT

Product: outer membrane lipoprotein (lipocalin)

Products: NA

Alternate protein names: Protein vlp [H]

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MFKSISKVGFGAVILMMLNGCLGMPKGVEPVTGFELNRYLGTWYEIARLDHSFEDGLSQVSAEYSINEDDSVKVINRGFS
DQDQQWSEALGKAKFVDGSDEGYLKVSFFGPFYGSYVVFELDKENYQYAFVSGPDLDYLWLLSRTKKVDQEVIERFVSTA
QSLGFKTNELIFVEQK

Sequences:

>Translated_176_residues
MFKSISKVGFGAVILMMLNGCLGMPKGVEPVTGFELNRYLGTWYEIARLDHSFEDGLSQVSAEYSINEDDSVKVINRGFS
DQDQQWSEALGKAKFVDGSDEGYLKVSFFGPFYGSYVVFELDKENYQYAFVSGPDLDYLWLLSRTKKVDQEVIERFVSTA
QSLGFKTNELIFVEQK
>Mature_176_residues
MFKSISKVGFGAVILMMLNGCLGMPKGVEPVTGFELNRYLGTWYEIARLDHSFEDGLSQVSAEYSINEDDSVKVINRGFS
DQDQQWSEALGKAKFVDGSDEGYLKVSFFGPFYGSYVVFELDKENYQYAFVSGPDLDYLWLLSRTKKVDQEVIERFVSTA
QSLGFKTNELIFVEQK

Specific function: Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids [H]

COG id: COG3040

COG function: function code M; Bacterial lipocalin

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the calycin superfamily. Lipocalin family [H]

Homologues:

Organism=Escherichia coli, GI1790592, Length=164, Percent_Identity=46.3414634146341, Blast_Score=158, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012674
- InterPro:   IPR011038
- InterPro:   IPR013208
- InterPro:   IPR022271
- InterPro:   IPR002446
- InterPro:   IPR022272 [H]

Pfam domain/function: PF08212 Lipocalin_2 [H]

EC number: NA

Molecular weight: Translated: 19975; Mature: 19975

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKSISKVGFGAVILMMLNGCLGMPKGVEPVTGFELNRYLGTWYEIARLDHSFEDGLSQV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHH
SAEYSINEDDSVKVINRGFSDQDQQWSEALGKAKFVDGSDEGYLKVSFFGPFYGSYVVFE
HHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCEEECCCCCCCEEEEEEECCCCCCEEEEE
LDKENYQYAFVSGPDLDYLWLLSRTKKVDQEVIERFVSTAQSLGFKTNELIFVEQK
ECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
>Mature Secondary Structure
MFKSISKVGFGAVILMMLNGCLGMPKGVEPVTGFELNRYLGTWYEIARLDHSFEDGLSQV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCHHHHHHHH
SAEYSINEDDSVKVINRGFSDQDQQWSEALGKAKFVDGSDEGYLKVSFFGPFYGSYVVFE
HHCCCCCCCCCEEEEECCCCCCHHHHHHHHCCEEECCCCCCCEEEEEEECCCCCCEEEEE
LDKENYQYAFVSGPDLDYLWLLSRTKKVDQEVIERFVSTAQSLGFKTNELIFVEQK
ECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8514410; 10952301 [H]