| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is 59713041
Identifier: 59713041
GI number: 59713041
Start: 2733463
End: 2734134
Strand: Reverse
Name: 59713041
Synonym: VF_2434
Alternate gene names: NA
Gene position: 2734134-2733463 (Counterclockwise)
Preceding gene: 59713042
Following gene: 59713040
Centisome position: 94.36
GC content: 35.57
Gene sequence:
>672_bases ATGAAAAAGAAAGTTATTATTAGTTGGTCATCAGGAAAGGATTCAACACTCACTCTTATTCGATTGCTTGAGAATCCAGA CTATGAAGTTGTTGCTTTATATACGACACATGTAGCAAATGAAGTCCCATTTCAAGTAACTCCATTATCAGTTGTTCAAA TGCAAGCTGATTTAGTCGACCTGCCATTAATCACAATCGAATTGCCAACCGTGTTCCCTGCCAACAATGAATATCAAAGT TTAGTCATAACTGGTTTAAAAGAATGTGGTATTGAGTTTGATTCTGTTGCTTTCGGTGACATGTTTTGCAATGGCATTGT TGATTATCGTAAAAGCTATATCGAAAAAGCAGGTTGGGACTGTGTTTTTCCTTTAATAGGGCAATCAAGCAGAGACTTGG CTGAGGAGATTATTTCATTAGGTATTAAAACTATTCTTGTTACAACTGATGGGACTCAACTTAATAATCAATTTTGTGGA AAAGTATACACAAGAGAATTGATTGCACAGTTACCAATAGAAGTAGATCCTTGCGGAGAAAATGGTGAGTTTCATTCTTT AGTGGTTAGCGCACCATGCTTTAAAGGTTCAATCCAATTATCTGATATGCAAATTGAAAAACAACAGCGCTTTACTCATC TTCGTTATAACGCTTCTGTTTTACAAAACTAG
Upstream 100 bases:
>100_bases CTATAAACCTGCAGAGCGCTCATATTATGTTAGTTTAGATTATCAATTTTAATTTGATTTAAGACCGCCTTCATTGGCGG TTTTTCATTTTGAGGTATGA
Downstream 100 bases:
>100_bases TGCAAGAGGTATGATTAGAGCTCATCTTTTTATATCGGCTTACAATAGAGTCTGTGGTTTCAGTTATGCCAAAACACATT TTGATTTTTGATTCAGGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 223; Mature: 223
Protein sequence:
>223_residues MKKKVIISWSSGKDSTLTLIRLLENPDYEVVALYTTHVANEVPFQVTPLSVVQMQADLVDLPLITIELPTVFPANNEYQS LVITGLKECGIEFDSVAFGDMFCNGIVDYRKSYIEKAGWDCVFPLIGQSSRDLAEEIISLGIKTILVTTDGTQLNNQFCG KVYTRELIAQLPIEVDPCGENGEFHSLVVSAPCFKGSIQLSDMQIEKQQRFTHLRYNASVLQN
Sequences:
>Translated_223_residues MKKKVIISWSSGKDSTLTLIRLLENPDYEVVALYTTHVANEVPFQVTPLSVVQMQADLVDLPLITIELPTVFPANNEYQS LVITGLKECGIEFDSVAFGDMFCNGIVDYRKSYIEKAGWDCVFPLIGQSSRDLAEEIISLGIKTILVTTDGTQLNNQFCG KVYTRELIAQLPIEVDPCGENGEFHSLVVSAPCFKGSIQLSDMQIEKQQRFTHLRYNASVLQN >Mature_223_residues MKKKVIISWSSGKDSTLTLIRLLENPDYEVVALYTTHVANEVPFQVTPLSVVQMQADLVDLPLITIELPTVFPANNEYQS LVITGLKECGIEFDSVAFGDMFCNGIVDYRKSYIEKAGWDCVFPLIGQSSRDLAEEIISLGIKTILVTTDGTQLNNQFCG KVYTRELIAQLPIEVDPCGENGEFHSLVVSAPCFKGSIQLSDMQIEKQQRFTHLRYNASVLQN
Specific function: Unknown
COG id: COG2102
COG function: function code R; Predicted ATPases of PP-loop superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24886; Mature: 24886
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKKVIISWSSGKDSTLTLIRLLENPDYEVVALYTTHVANEVPFQVTPLSVVQMQADLVD CCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHCCCC LPLITIELPTVFPANNEYQSLVITGLKECGIEFDSVAFGDMFCNGIVDYRKSYIEKAGWD CCEEEEEECEEECCCCCHHHHHEECHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCC CVFPLIGQSSRDLAEEIISLGIKTILVTTDGTQLNNQFCGKVYTRELIAQLPIEVDPCGE EEEHHCCCCCHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCCC NGEFHSLVVSAPCFKGSIQLSDMQIEKQQRFTHLRYNASVLQN CCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHEECHHHHCC >Mature Secondary Structure MKKKVIISWSSGKDSTLTLIRLLENPDYEVVALYTTHVANEVPFQVTPLSVVQMQADLVD CCCEEEEEECCCCCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEECCHHHHHHHHCCCC LPLITIELPTVFPANNEYQSLVITGLKECGIEFDSVAFGDMFCNGIVDYRKSYIEKAGWD CCEEEEEECEEECCCCCHHHHHEECHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHCCCC CVFPLIGQSSRDLAEEIISLGIKTILVTTDGTQLNNQFCGKVYTRELIAQLPIEVDPCGE EEEHHCCCCCHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCCC NGEFHSLVVSAPCFKGSIQLSDMQIEKQQRFTHLRYNASVLQN CCCEEEEEEECCCCCCEEEEEHHHHHHHHHHHHHEECHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA