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The map label for this gene is treC [C]

Identifier: 59712876

GI number: 59712876

Start: 2548878

End: 2550782

Strand: Direct

Name: treC [C]

Synonym: VF_2269

Alternate gene names: 59712876

Gene position: 2548878-2550782 (Clockwise)

Preceding gene: 59712875

Following gene: 59712877

Centisome position: 87.97

GC content: 40.1

Gene sequence:

>1905_bases
ATGACGGCACAAAGCGATAACTTACGGATTTACCAAATCATGGTCGAAAGCTTTGTCGATGGTGACAACACAATCGGACA
TGGTACAGGCTATGGTCCAAGTCATCATAATGGCGACCTACAAGGAATTATTGATTCATTAGATTACATTCAATCGCTTG
GTATGAATGCCATTTGGATGACTCCTGTCTTTGAGTCAGCCCCTCTAGATAATCAAGACCATTGGGCAGATAAGCTCGAT
GCCACCGGATATTTTGCTACCGATTTTTTTAAAATAGATCCTCGCTTTGGTACATTAGAAAAAGCCAAAGAATTAGTTGA
AGAAGCTCATAAGCGCGGTATTTACGTATTATTTGATGGTGTGTTTGGCCACCATAAAAAAGGACTCATTAAGCCATCGC
CAACAGGGTTACTTCCAGCTGGAGAGCACAACCCAGTTAGCTACCCTGAAAGTGAAGCTTTTTATAAAGAAGTCGCAACC
TACTGGATTAAAGAATTAAAAATCGACGGATGGCGATTAGACCAAGCTTACCAAGTGCCAACACAATCTTGGACAAACAT
TCGTAAAGCCGTTGACGCCGCATCAAAAGAGACCTTTTATACCAATAATAAAGGTGAGCAAGTAAATCCACTCGGCTATA
TGGTTGCCGAGATCTGGAATAACGAAAACTACATAACAGAAACAGGTTATGGCAGCGAACAAAATCCTGCTCTTTGCTCA
GCTTTTGACTTTCCTTTGCGTTTTCGCGTTGCTGAAACCTTTGCAGTTAATGAAAGTGGCGTAGGACATAAAGGAGGAGA
TTGGCTTAATCAAGGTATGCAAATGCACGAGCTTTATCCTCCTCATGCTGTACCTAATTTAATGCTAGGAAATCACGATG
TTGTTCGCTTTGGTGACTTACTTCAACGTGGTGATATTGCTAATCCAAACGACAAAAACTATTGGACTCGACACAAAGCA
GCCCTCTCTTTTCAAGCCGCTTATACAGGCCCAATAACCCTATACTATGGTGATGAAATTGGTGATCAAGTTGACGGATT
TTCCAAAAAAGAAAATAAAGATACTTGTGCTATTAAAGGACTTTGTGATGATCACATTGCTCGATCATCTGCCAAAATTG
ATGGTCTTACCGCCAAGTTGACTCCAGAGCAAACGGATTTAAAAAATTACGCTACCACATTAATGCAATTGCGTATTAAG
CACCCAGCGCTATCTAAGGGTAAAAGAGTTAATCTAGTAGCTAATAAAGCAGTCTATATCGATCATAAACAATCTGAAAA
TGATGCCATTGTTTATATGGTAAGTACTCAAGAGGCAGATCAAACGCTCTCCTTAGATGCAGAACAGATCGGGTCAAAAG
GTAACTTAATTGATCTAATCACCGGGCAGATTTTCACTCCAATGAATGGAATATACACCATCCCATTATCCAACTTTGAA
AGTCGATTTTTAACAATAGAAGAGCCAAATAGTACAGGGCCTATCATAGAGCAAAAAGAAATAGCGCTATATGGCAGTGG
TTTTATGGCGCAATGCGATAACCCTACTATCACAGACACCAACGCCCCTTTACAAGATACCTTATATTTAGTTGGCGATT
TCTCTGACTCTCCTTGGAGCCATAAAGAAACCAGAGCGTATCAATATAAAGGAAACAACATTTATCAAGTGGTCATCAAT
GAAAAACGAGGCCCTTATAAAATGCAATATGCAACAAAAGGTTGGAGCGCTCAATATACCGCTGAAGGACTATCACCCAA
ATTGGGACAATCAAATAAACTCATTACTAGTGGCTATGGCCAAGATACCGCCATCTATCTTCCTGAAGATGGTAACTACG
TTTGGAGCTTAGAGTTCAATTCCCAAGGAGAGCCAAAATCAATGATGGTTTCTAAGTGTAAATAA

Upstream 100 bases:

>100_bases
AAAAACGACAATAGCTCTCGCTATTACCTCACTTTTGAGCGCATGTGGCTCAACATCTAATAACGACATATCTCCCTTAA
CTTATCAATGTGATCCGCAA

Downstream 100 bases:

>100_bases
GCCCTCCTTTACCTTAATTTAATGAATAAAATATGAACTATTTCTAACCAACAATGTCTATTGTTGGTTAGATCACATTT
CTGATTATTTCTTAATTTCC

Product: glycosidase

Products: NA

Alternate protein names: CDase; Cyclomaltodextrin hydrolase, decycling [H]

Number of amino acids: Translated: 634; Mature: 633

Protein sequence:

>634_residues
MTAQSDNLRIYQIMVESFVDGDNTIGHGTGYGPSHHNGDLQGIIDSLDYIQSLGMNAIWMTPVFESAPLDNQDHWADKLD
ATGYFATDFFKIDPRFGTLEKAKELVEEAHKRGIYVLFDGVFGHHKKGLIKPSPTGLLPAGEHNPVSYPESEAFYKEVAT
YWIKELKIDGWRLDQAYQVPTQSWTNIRKAVDAASKETFYTNNKGEQVNPLGYMVAEIWNNENYITETGYGSEQNPALCS
AFDFPLRFRVAETFAVNESGVGHKGGDWLNQGMQMHELYPPHAVPNLMLGNHDVVRFGDLLQRGDIANPNDKNYWTRHKA
ALSFQAAYTGPITLYYGDEIGDQVDGFSKKENKDTCAIKGLCDDHIARSSAKIDGLTAKLTPEQTDLKNYATTLMQLRIK
HPALSKGKRVNLVANKAVYIDHKQSENDAIVYMVSTQEADQTLSLDAEQIGSKGNLIDLITGQIFTPMNGIYTIPLSNFE
SRFLTIEEPNSTGPIIEQKEIALYGSGFMAQCDNPTITDTNAPLQDTLYLVGDFSDSPWSHKETRAYQYKGNNIYQVVIN
EKRGPYKMQYATKGWSAQYTAEGLSPKLGQSNKLITSGYGQDTAIYLPEDGNYVWSLEFNSQGEPKSMMVSKCK

Sequences:

>Translated_634_residues
MTAQSDNLRIYQIMVESFVDGDNTIGHGTGYGPSHHNGDLQGIIDSLDYIQSLGMNAIWMTPVFESAPLDNQDHWADKLD
ATGYFATDFFKIDPRFGTLEKAKELVEEAHKRGIYVLFDGVFGHHKKGLIKPSPTGLLPAGEHNPVSYPESEAFYKEVAT
YWIKELKIDGWRLDQAYQVPTQSWTNIRKAVDAASKETFYTNNKGEQVNPLGYMVAEIWNNENYITETGYGSEQNPALCS
AFDFPLRFRVAETFAVNESGVGHKGGDWLNQGMQMHELYPPHAVPNLMLGNHDVVRFGDLLQRGDIANPNDKNYWTRHKA
ALSFQAAYTGPITLYYGDEIGDQVDGFSKKENKDTCAIKGLCDDHIARSSAKIDGLTAKLTPEQTDLKNYATTLMQLRIK
HPALSKGKRVNLVANKAVYIDHKQSENDAIVYMVSTQEADQTLSLDAEQIGSKGNLIDLITGQIFTPMNGIYTIPLSNFE
SRFLTIEEPNSTGPIIEQKEIALYGSGFMAQCDNPTITDTNAPLQDTLYLVGDFSDSPWSHKETRAYQYKGNNIYQVVIN
EKRGPYKMQYATKGWSAQYTAEGLSPKLGQSNKLITSGYGQDTAIYLPEDGNYVWSLEFNSQGEPKSMMVSKCK
>Mature_633_residues
TAQSDNLRIYQIMVESFVDGDNTIGHGTGYGPSHHNGDLQGIIDSLDYIQSLGMNAIWMTPVFESAPLDNQDHWADKLDA
TGYFATDFFKIDPRFGTLEKAKELVEEAHKRGIYVLFDGVFGHHKKGLIKPSPTGLLPAGEHNPVSYPESEAFYKEVATY
WIKELKIDGWRLDQAYQVPTQSWTNIRKAVDAASKETFYTNNKGEQVNPLGYMVAEIWNNENYITETGYGSEQNPALCSA
FDFPLRFRVAETFAVNESGVGHKGGDWLNQGMQMHELYPPHAVPNLMLGNHDVVRFGDLLQRGDIANPNDKNYWTRHKAA
LSFQAAYTGPITLYYGDEIGDQVDGFSKKENKDTCAIKGLCDDHIARSSAKIDGLTAKLTPEQTDLKNYATTLMQLRIKH
PALSKGKRVNLVANKAVYIDHKQSENDAIVYMVSTQEADQTLSLDAEQIGSKGNLIDLITGQIFTPMNGIYTIPLSNFES
RFLTIEEPNSTGPIIEQKEIALYGSGFMAQCDNPTITDTNAPLQDTLYLVGDFSDSPWSHKETRAYQYKGNNIYQVVINE
KRGPYKMQYATKGWSAQYTAEGLSPKLGQSNKLITSGYGQDTAIYLPEDGNYVWSLEFNSQGEPKSMMVSKCK

Specific function: Hydrolyzes cyclodextrins. Can also act on linear maltodextrins, with the exception of maltose [H]

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Escherichia coli, GI1790687, Length=132, Percent_Identity=39.3939393939394, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1789995, Length=133, Percent_Identity=32.3308270676692, Blast_Score=69, Evalue=9e-13,
Organism=Saccharomyces cerevisiae, GI6322245, Length=115, Percent_Identity=38.2608695652174, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221330053, Length=116, Percent_Identity=37.9310344827586, Blast_Score=75, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24586597, Length=119, Percent_Identity=33.6134453781513, Blast_Score=70, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24586587, Length=119, Percent_Identity=35.2941176470588, Blast_Score=69, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24586599, Length=116, Percent_Identity=34.4827586206897, Blast_Score=69, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004185
- InterPro:   IPR006589
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02903 Alpha-amylase_N [H]

EC number: =3.2.1.54 [H]

Molecular weight: Translated: 70860; Mature: 70729

Theoretical pI: Translated: 5.12; Mature: 5.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQSDNLRIYQIMVESFVDGDNTIGHGTGYGPSHHNGDLQGIIDSLDYIQSLGMNAIWM
CCCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
TPVFESAPLDNQDHWADKLDATGYFATDFFKIDPRFGTLEKAKELVEEAHKRGIYVLFDG
CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEC
VFGHHKKGLIKPSPTGLLPAGEHNPVSYPESEAFYKEVATYWIKELKIDGWRLDQAYQVP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCEEECC
TQSWTNIRKAVDAASKETFYTNNKGEQVNPLGYMVAEIWNNENYITETGYGSEQNPALCS
CHHHHHHHHHHHHCCCCEEEECCCCCEECHHHHEEHHHCCCCCEEEECCCCCCCCCCEEE
AFDFPLRFRVAETFAVNESGVGHKGGDWLNQGMQMHELYPPHAVPNLMLGNHDVVRFGDL
EECCCEEEEEEEEEEECCCCCCCCCCHHHHCCCEEHHCCCCCCCCCCEECCCCHHHHHHH
LQRGDIANPNDKNYWTRHKAALSFQAAYTGPITLYYGDEIGDQVDGFSKKENKDTCAIKG
HHCCCCCCCCCCCCEEHHHHEEEEEEEECCCEEEEECCCCCCHHCCCCCCCCCCCEEEEC
LCDDHIARSSAKIDGLTAKLTPEQTDLKNYATTLMQLRIKHPALSKGKRVNLVANKAVYI
CCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEE
DHKQSENDAIVYMVSTQEADQTLSLDAEQIGSKGNLIDLITGQIFTPMNGIYTIPLSNFE
ECCCCCCCEEEEEEECCCCCCEEECCHHHCCCCCCEEEEECCCEECCCCCEEEEECCCCC
SRFLTIEEPNSTGPIIEQKEIALYGSGFMAQCDNPTITDTNAPLQDTLYLVGDFSDSPWS
CEEEEEECCCCCCCCEECCEEEEEECCCEEECCCCEEECCCCCCCCEEEEEECCCCCCCC
HKETRAYQYKGNNIYQVVINEKRGPYKMQYATKGWSAQYTAEGLSPKLGQSNKLITSGYG
CCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCEEEECCC
QDTAIYLPEDGNYVWSLEFNSQGEPKSMMVSKCK
CCEEEEEECCCCEEEEEEECCCCCCHHHHHCCCC
>Mature Secondary Structure 
TAQSDNLRIYQIMVESFVDGDNTIGHGTGYGPSHHNGDLQGIIDSLDYIQSLGMNAIWM
CCCCCCCEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE
TPVFESAPLDNQDHWADKLDATGYFATDFFKIDPRFGTLEKAKELVEEAHKRGIYVLFDG
CCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEEC
VFGHHKKGLIKPSPTGLLPAGEHNPVSYPESEAFYKEVATYWIKELKIDGWRLDQAYQVP
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEECCCEEECC
TQSWTNIRKAVDAASKETFYTNNKGEQVNPLGYMVAEIWNNENYITETGYGSEQNPALCS
CHHHHHHHHHHHHCCCCEEEECCCCCEECHHHHEEHHHCCCCCEEEECCCCCCCCCCEEE
AFDFPLRFRVAETFAVNESGVGHKGGDWLNQGMQMHELYPPHAVPNLMLGNHDVVRFGDL
EECCCEEEEEEEEEEECCCCCCCCCCHHHHCCCEEHHCCCCCCCCCCEECCCCHHHHHHH
LQRGDIANPNDKNYWTRHKAALSFQAAYTGPITLYYGDEIGDQVDGFSKKENKDTCAIKG
HHCCCCCCCCCCCCEEHHHHEEEEEEEECCCEEEEECCCCCCHHCCCCCCCCCCCEEEEC
LCDDHIARSSAKIDGLTAKLTPEQTDLKNYATTLMQLRIKHPALSKGKRVNLVANKAVYI
CCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCEEEE
DHKQSENDAIVYMVSTQEADQTLSLDAEQIGSKGNLIDLITGQIFTPMNGIYTIPLSNFE
ECCCCCCCEEEEEEECCCCCCEEECCHHHCCCCCCEEEEECCCEECCCCCEEEEECCCCC
SRFLTIEEPNSTGPIIEQKEIALYGSGFMAQCDNPTITDTNAPLQDTLYLVGDFSDSPWS
CEEEEEECCCCCCCCEECCEEEEEECCCEEECCCCEEECCCCCCCCEEEEEECCCCCCCC
HKETRAYQYKGNNIYQVVINEKRGPYKMQYATKGWSAQYTAEGLSPKLGQSNKLITSGYG
CCCCEEEEECCCCEEEEEEECCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCEEEECCC
QDTAIYLPEDGNYVWSLEFNSQGEPKSMMVSKCK
CCEEEEEECCCCEEEEEEECCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1644767; 8425614 [H]