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The map label for this gene is yraM [C]

Identifier: 59712818

GI number: 59712818

Start: 2484831

End: 2486642

Strand: Direct

Name: yraM [C]

Synonym: VF_2211

Alternate gene names: 59712818

Gene position: 2484831-2486642 (Clockwise)

Preceding gene: 59712801

Following gene: 59712819

Centisome position: 85.76

GC content: 39.51

Gene sequence:

>1812_bases
ATGGCAAATATGACCCCGAGAAAGAACAGTGTAACACGCTTGATTGCTCCTGTAGCCTTAGCTCTGACATTGGCTGCTTG
TTCAAGCTCTCCAAAAGCACCTGATCGTCTGGATATTACTCAATCTCCAACTGAAACGAGTAATGCATATATTTTAAAAG
CAGACCAGCAACAAGGAGCGCTTGAAGCTGATTTCTTAATCATGGCATTAAAAGCGGCAGTACAAGAGCAAAACTTTGAT
CTTGCAGATAAGTTGTTTACACGCTTAGCAACAATGCAACTCTCTCCGGCACAAACAGCAGAAATGCAACTTGCACATGC
CAAAATGCTGAAATCTCAAAGCCAATACGAAGATGCATTAAAAACGCTAAATTTTGAGGCATGGTGGAAGTTAGAAAACA
GCCAATGGGTCGAGTATCACAAATTACGCCATGAATTATATTTATTAAGCGGTGATAATCTAAACTCAGCTCGTGAGTTA
ATTGAATTAGAACCATTCACTGCAGAAGATCAAAAAGCACAGCTTTGGACTCAAGTTTGGACAAGTGTTTCTTCATTAAA
CAGTACCGCTCTTGAAGAAGTAAAACTTGATGAAACAGAAACTAATTTACATGGCTGGGTACAACTAGCTACTTACTTAG
ATACGCTGAAGCACTCTCCAATGCGTTTACAAGAAACCTTAAATGAATGGTTACTTGCAAATCCAACACATCCAGCAGCG
ACTTACACACCTCAAGTCATCTTAGATATTCTTGCTCTTGAAATTGTTCGTCCTGAAAATGTAGCACTACTATTACCTTT
AAGTGGTCGCTTTGGACCTCAAGGTATTCGTGTTCGTGATGGTTTCATTAATGCCATGATGGAAGATAAAGAGCGAGACG
AGTTTACTAAGCTTAAAGTCATTGATACTCAAGCGACATCAATGGCAGAAATAATGACCACATTAGAAAAAGAACAAATT
CAATTTGTTGTTGGACCTTTAGTCCGTAGTAAAATTGAAGAGTTCCAGTCTTTAAATTCAACTGAGATTGCGCAACTAGC
TCTTAATATCCCAAGTGAAATTGATACTGATATAAACAGTTGTTATTTCACACTGTCGCCAGAACAAGAAGCAGAGCAAG
CGGCTGTACATCTATTTAAACAAGGCTTTAAACACCCACTTTATCTTGCACCACAAGGCACAATGGGTGAGCGATTAAGC
CAAGCCTTCAGTGATAAATGGTTCCAACTAACAGCAAAACGTCCGTCAATCAGCTACTTTGGGTCAAAAGCGCAACTACA
ACAGAAAGTAAACAGTGTTTTTGGTATTGAAAGTAGCCAAGCTCGTATCTACCAAATGAACGCATTAGCGAGCATGGAAT
TAGAAGCTCAACCTCGTAGTCGTCGTGACATTGATGCGGTTTACATGGTAGCTAAAAGCAGTGAGTTGGTTCTATTAAAA
CCTTTCATTGAAGTTGCGATTAATCCTGGAATTAAACCACCAAAACTGTATGCAAGTTCTCGTAGTAACAGTGGCCGTCA
AACTCAGCTAGTTGAAATTAAAGGCATTGAGTTTAGTGACATTCCATTATTAACAAATGAAAACCACAGTTTTAAAGCGC
AATACGATGAATTGTGGCCAAAAAGTAGCAACGGTGAAACTCGACTTCATGCTCTAGGTATGGATGCTTACCAGTTGGTT
GCTGAACTACCTCAAATGAAAGCCGTTGATAATTACCGTATGGAAGGTAAAACAGGTGAACTAAGCCTGAACCAAGAGTG
CGTAATTCAACGTAAAATGAGCTGGGCTGTTCATGGAGAAGAAACAGAATAA

Upstream 100 bases:

>100_bases
AGACTAAGCAATCACTATAATCAAAAATATATTTTAGCTGTTTGGGTGATGAGCATCCATAGTAACAACAGCCCTTTTAA
GTAGGACCAGTATATTACCC

Downstream 100 bases:

>100_bases
GCGAGCAAAGGGCGAATTTTATGAGTTGATGGCACAACGCTATTTAGAGCAACATCAACTCACATTCATTGCCCGCAATT
TCCAGTCAAAAACCGGAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 603; Mature: 602

Protein sequence:

>603_residues
MANMTPRKNSVTRLIAPVALALTLAACSSSPKAPDRLDITQSPTETSNAYILKADQQQGALEADFLIMALKAAVQEQNFD
LADKLFTRLATMQLSPAQTAEMQLAHAKMLKSQSQYEDALKTLNFEAWWKLENSQWVEYHKLRHELYLLSGDNLNSAREL
IELEPFTAEDQKAQLWTQVWTSVSSLNSTALEEVKLDETETNLHGWVQLATYLDTLKHSPMRLQETLNEWLLANPTHPAA
TYTPQVILDILALEIVRPENVALLLPLSGRFGPQGIRVRDGFINAMMEDKERDEFTKLKVIDTQATSMAEIMTTLEKEQI
QFVVGPLVRSKIEEFQSLNSTEIAQLALNIPSEIDTDINSCYFTLSPEQEAEQAAVHLFKQGFKHPLYLAPQGTMGERLS
QAFSDKWFQLTAKRPSISYFGSKAQLQQKVNSVFGIESSQARIYQMNALASMELEAQPRSRRDIDAVYMVAKSSELVLLK
PFIEVAINPGIKPPKLYASSRSNSGRQTQLVEIKGIEFSDIPLLTNENHSFKAQYDELWPKSSNGETRLHALGMDAYQLV
AELPQMKAVDNYRMEGKTGELSLNQECVIQRKMSWAVHGEETE

Sequences:

>Translated_603_residues
MANMTPRKNSVTRLIAPVALALTLAACSSSPKAPDRLDITQSPTETSNAYILKADQQQGALEADFLIMALKAAVQEQNFD
LADKLFTRLATMQLSPAQTAEMQLAHAKMLKSQSQYEDALKTLNFEAWWKLENSQWVEYHKLRHELYLLSGDNLNSAREL
IELEPFTAEDQKAQLWTQVWTSVSSLNSTALEEVKLDETETNLHGWVQLATYLDTLKHSPMRLQETLNEWLLANPTHPAA
TYTPQVILDILALEIVRPENVALLLPLSGRFGPQGIRVRDGFINAMMEDKERDEFTKLKVIDTQATSMAEIMTTLEKEQI
QFVVGPLVRSKIEEFQSLNSTEIAQLALNIPSEIDTDINSCYFTLSPEQEAEQAAVHLFKQGFKHPLYLAPQGTMGERLS
QAFSDKWFQLTAKRPSISYFGSKAQLQQKVNSVFGIESSQARIYQMNALASMELEAQPRSRRDIDAVYMVAKSSELVLLK
PFIEVAINPGIKPPKLYASSRSNSGRQTQLVEIKGIEFSDIPLLTNENHSFKAQYDELWPKSSNGETRLHALGMDAYQLV
AELPQMKAVDNYRMEGKTGELSLNQECVIQRKMSWAVHGEETE
>Mature_602_residues
ANMTPRKNSVTRLIAPVALALTLAACSSSPKAPDRLDITQSPTETSNAYILKADQQQGALEADFLIMALKAAVQEQNFDL
ADKLFTRLATMQLSPAQTAEMQLAHAKMLKSQSQYEDALKTLNFEAWWKLENSQWVEYHKLRHELYLLSGDNLNSARELI
ELEPFTAEDQKAQLWTQVWTSVSSLNSTALEEVKLDETETNLHGWVQLATYLDTLKHSPMRLQETLNEWLLANPTHPAAT
YTPQVILDILALEIVRPENVALLLPLSGRFGPQGIRVRDGFINAMMEDKERDEFTKLKVIDTQATSMAEIMTTLEKEQIQ
FVVGPLVRSKIEEFQSLNSTEIAQLALNIPSEIDTDINSCYFTLSPEQEAEQAAVHLFKQGFKHPLYLAPQGTMGERLSQ
AFSDKWFQLTAKRPSISYFGSKAQLQQKVNSVFGIESSQARIYQMNALASMELEAQPRSRRDIDAVYMVAKSSELVLLKP
FIEVAINPGIKPPKLYASSRSNSGRQTQLVEIKGIEFSDIPLLTNENHSFKAQYDELWPKSSNGETRLHALGMDAYQLVA
ELPQMKAVDNYRMEGKTGELSLNQECVIQRKMSWAVHGEETE

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yraM [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=316, Percent_Identity=32.9113924050633, Blast_Score=171, Evalue=9e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 67948; Mature: 67817

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANMTPRKNSVTRLIAPVALALTLAACSSSPKAPDRLDITQSPTETSNAYILKADQQQGA
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
LEADFLIMALKAAVQEQNFDLADKLFTRLATMQLSPAQTAEMQLAHAKMLKSQSQYEDAL
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KTLNFEAWWKLENSQWVEYHKLRHELYLLSGDNLNSARELIELEPFTAEDQKAQLWTQVW
HHCCCCEEEEECCCCHHHHHHHHEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
TSVSSLNSTALEEVKLDETETNLHGWVQLATYLDTLKHSPMRLQETLNEWLLANPTHPAA
HHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECCCCCCCC
TYTPQVILDILALEIVRPENVALLLPLSGRFGPQGIRVRDGFINAMMEDKERDEFTKLKV
CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHCCCCCCCCEEEEE
IDTQATSMAEIMTTLEKEQIQFVVGPLVRSKIEEFQSLNSTEIAQLALNIPSEIDTDINS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCCCCC
CYFTLSPEQEAEQAAVHLFKQGFKHPLYLAPQGTMGERLSQAFSDKWFQLTAKRPSISYF
EEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHC
GSKAQLQQKVNSVFGIESSQARIYQMNALASMELEAQPRSRRDIDAVYMVAKSSELVLLK
CCHHHHHHHHHHHHCCCCCCCEEEEEHHHEEEEECCCCCCCCCCCEEEEEECCCCEEEEE
PFIEVAINPGIKPPKLYASSRSNSGRQTQLVEIKGIEFSDIPLLTNENHSFKAQYDELWP
CHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCEEHHHHCCC
KSSNGETRLHALGMDAYQLVAELPQMKAVDNYRMEGKTGELSLNQECVIQRKMSWAVHGE
CCCCCCCEEEEECCHHHHHHHHCHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHEEECCC
ETE
CCC
>Mature Secondary Structure 
ANMTPRKNSVTRLIAPVALALTLAACSSSPKAPDRLDITQSPTETSNAYILKADQQQGA
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
LEADFLIMALKAAVQEQNFDLADKLFTRLATMQLSPAQTAEMQLAHAKMLKSQSQYEDAL
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
KTLNFEAWWKLENSQWVEYHKLRHELYLLSGDNLNSARELIELEPFTAEDQKAQLWTQVW
HHCCCCEEEEECCCCHHHHHHHHEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
TSVSSLNSTALEEVKLDETETNLHGWVQLATYLDTLKHSPMRLQETLNEWLLANPTHPAA
HHHHHCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHEECCCCCCCC
TYTPQVILDILALEIVRPENVALLLPLSGRFGPQGIRVRDGFINAMMEDKERDEFTKLKV
CCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHCCCCCCCCEEEEE
IDTQATSMAEIMTTLEKEQIQFVVGPLVRSKIEEFQSLNSTEIAQLALNIPSEIDTDINS
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHCCCCCC
CYFTLSPEQEAEQAAVHLFKQGFKHPLYLAPQGTMGERLSQAFSDKWFQLTAKRPSISYF
EEEEECCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHCCCEEEEEECCCCHHHC
GSKAQLQQKVNSVFGIESSQARIYQMNALASMELEAQPRSRRDIDAVYMVAKSSELVLLK
CCHHHHHHHHHHHHCCCCCCCEEEEEHHHEEEEECCCCCCCCCCCEEEEEECCCCEEEEE
PFIEVAINPGIKPPKLYASSRSNSGRQTQLVEIKGIEFSDIPLLTNENHSFKAQYDELWP
CHHHHHCCCCCCCCCEEECCCCCCCCCEEEEEEECCCCCCCCEEECCCCCCEEHHHHCCC
KSSNGETRLHALGMDAYQLVAELPQMKAVDNYRMEGKTGELSLNQECVIQRKMSWAVHGE
CCCCCCCEEEEECCHHHHHHHHCHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHEEECCC
ETE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]