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The map label for this gene is yraN [C]

Identifier: 59712819

GI number: 59712819

Start: 2486623

End: 2486994

Strand: Direct

Name: yraN [C]

Synonym: VF_2212

Alternate gene names: 59712819

Gene position: 2486623-2486994 (Clockwise)

Preceding gene: 59712818

Following gene: 59712820

Centisome position: 85.82

GC content: 39.25

Gene sequence:

>372_bases
ATGGAGAAGAAACAGAATAAGCGAGCAAAGGGCGAATTTTATGAGTTGATGGCACAACGCTATTTAGAGCAACATCAACT
CACATTCATTGCCCGCAATTTCCAGTCAAAAACCGGAGAACTTGATCTCATCATGCGAGATCAAGATTCTTTTGTGTTTG
TTGAAGTAAAATACCGTAACACTTCAAATTTCGGTTCTGCGCAAGAAATGGTAACATGGCAAAAACAGCGCAAATTACAG
CGAACCGCTCTCTTCTGGCTTATGAAGAATAAGCTCTCTGTTGAACATACATCTTTTAGATTTGATGTCGTTGCTATCCA
TGCTCAAGGTAAGGAAATCAACTGGATCAAAAATGCTATTGTTGAAGGGTAA

Upstream 100 bases:

>100_bases
CAAATGAAAGCCGTTGATAATTACCGTATGGAAGGTAAAACAGGTGAACTAAGCCTGAACCAAGAGTGCGTAATTCAACG
TAAAATGAGCTGGGCTGTTC

Downstream 100 bases:

>100_bases
ACAATGCTAGAAAATATCAAAGAAAGCTTTACTGAAAGCATTCAAATCCAAATTGCCGCAGCGGAAGCTCTACCTGACCA
TATCATGCACGCATCCCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MEKKQNKRAKGEFYELMAQRYLEQHQLTFIARNFQSKTGELDLIMRDQDSFVFVEVKYRNTSNFGSAQEMVTWQKQRKLQ
RTALFWLMKNKLSVEHTSFRFDVVAIHAQGKEINWIKNAIVEG

Sequences:

>Translated_123_residues
MEKKQNKRAKGEFYELMAQRYLEQHQLTFIARNFQSKTGELDLIMRDQDSFVFVEVKYRNTSNFGSAQEMVTWQKQRKLQ
RTALFWLMKNKLSVEHTSFRFDVVAIHAQGKEINWIKNAIVEG
>Mature_123_residues
MEKKQNKRAKGEFYELMAQRYLEQHQLTFIARNFQSKTGELDLIMRDQDSFVFVEVKYRNTSNFGSAQEMVTWQKQRKLQ
RTALFWLMKNKLSVEHTSFRFDVVAIHAQGKEINWIKNAIVEG

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

Organism=Escherichia coli, GI1789538, Length=109, Percent_Identity=44.954128440367, Blast_Score=95, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2212_VIBF1 (Q5E2N9)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_205595.1
- STRING:   Q5E2N9
- GeneID:   3279510
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_2212
- NMPDR:   fig|312309.3.peg.2212
- eggNOG:   COG0792
- HOGENOM:   HBG710155
- OMA:   EVRQRKN
- PhylomeDB:   Q5E2N9
- ProtClustDB:   PRK12497
- BioCyc:   VFIS312309:VF2212-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10
- TIGRFAMs:   TIGR00252

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14679; Mature: 14679

Theoretical pI: Translated: 10.34; Mature: 10.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKKQNKRAKGEFYELMAQRYLEQHQLTFIARNFQSKTGELDLIMRDQDSFVFVEVKYRN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEECC
TSNFGSAQEMVTWQKQRKLQRTALFWLMKNKLSVEHTSFRFDVVAIHAQGKEINWIKNAI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEEEEEEEECCCCCHHHHHHH
VEG
CCC
>Mature Secondary Structure
MEKKQNKRAKGEFYELMAQRYLEQHQLTFIARNFQSKTGELDLIMRDQDSFVFVEVKYRN
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEEECC
TSNFGSAQEMVTWQKQRKLQRTALFWLMKNKLSVEHTSFRFDVVAIHAQGKEINWIKNAI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEEEEEEEEECCCCCHHHHHHH
VEG
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA