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The map label for this gene is recO [H]

Identifier: 59712692

GI number: 59712692

Start: 2322559

End: 2323275

Strand: Reverse

Name: recO [H]

Synonym: VF_2085

Alternate gene names: 59712692

Gene position: 2323275-2322559 (Counterclockwise)

Preceding gene: 59712693

Following gene: 59712691

Centisome position: 80.18

GC content: 41.28

Gene sequence:

>717_bases
GTGGAAGAAGGCTTACAACGCTGTTTTGTCCTGCACCGTAGACCATATAGTGAAAGCAGTCTAATTTTAGATGTGTTTAG
CGAGGAATATGGCCGTTTATCTATTATCTCTAAAGGGGCGAGAAGTAAACGCTCTAATTTAAAAGGCGTACTACAAGCCT
TCACGCCATTACTCATGAAATGGTCAGGTAAAGGCTCCATGCGTACACTGCGACAAGCTGAAACTATCAGCTTAGGCATC
CCTCTTACCGGTATAAATCTTTACTCAGCAATGTACATCAATGAATTATTGGTGCGAGTTGTAGAGCAAGAAACCCCATA
TCCAGCTCTTTTTCTTGATTATCTAACTGCTTTAACTGAATTAGCTCAGAGTACCAACCCAGAACCAGCACTACGACGTT
TTGAATTGGCTTTATTATCAGCAATGGGTTACGGCGTTGATTTCTTACATTGTGCAGGTAGTGGTGAAATGGTCTCTCCT
GAAATGACTTATCGTTACCGTGAGCAACAAGGTTTTATGGCGTCTATTCGTCATGACCCTTTAATGAGCTTTAAAGGTAA
TGAGCTTATTGCCATTAGTGAGCGACGATTTACAACACCAGAACAATTAAAAGCGGCAAAACGCTTTACACGTATAGCCT
TAAAGCCGTATCTTGGCGGTAAGCCCCTAAAAAGTAGGGAACTGTTTCTTCCTAGAACAAGGAGTATTCTAAAATGA

Upstream 100 bases:

>100_bases
TAAAGGGTTCAGAAGAGCCGCGGTAGGCATCGAGTCTTACCGCGGCTCTTCTGAAATCTGCAAGTGAAGCGATCTGAACT
CTTATTTATAGGTAAGAAAC

Downstream 100 bases:

>100_bases
GTTCAATTTTACTTGGCGTTAATATCGATCACGTAGCAACCCTTCGAAATGCGCGAGGTACTAAATACCCAGATCCTGTA
CACGCTGCAGAAATTGCTGA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGSMRTLRQAETISLGI
PLTGINLYSAMYINELLVRVVEQETPYPALFLDYLTALTELAQSTNPEPALRRFELALLSAMGYGVDFLHCAGSGEMVSP
EMTYRYREQQGFMASIRHDPLMSFKGNELIAISERRFTTPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK

Sequences:

>Translated_238_residues
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGSMRTLRQAETISLGI
PLTGINLYSAMYINELLVRVVEQETPYPALFLDYLTALTELAQSTNPEPALRRFELALLSAMGYGVDFLHCAGSGEMVSP
EMTYRYREQQGFMASIRHDPLMSFKGNELIAISERRFTTPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK
>Mature_238_residues
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMKWSGKGSMRTLRQAETISLGI
PLTGINLYSAMYINELLVRVVEQETPYPALFLDYLTALTELAQSTNPEPALRRFELALLSAMGYGVDFLHCAGSGEMVSP
EMTYRYREQQGFMASIRHDPLMSFKGNELIAISERRFTTPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

Organism=Escherichia coli, GI2367140, Length=228, Percent_Identity=63.1578947368421, Blast_Score=290, Evalue=4e-80,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 27035; Mature: 27035

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMK
CCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHE
WSGKGSMRTLRQAETISLGIPLTGINLYSAMYINELLVRVVEQETPYPALFLDYLTALTE
ECCCCHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAQSTNPEPALRRFELALLSAMGYGVDFLHCAGSGEMVSPEMTYRYREQQGFMASIRHDP
HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCHHHHHHHHHCCHHHHHCCCC
LMSFKGNELIAISERRFTTPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MEEGLQRCFVLHRRPYSESSLILDVFSEEYGRLSIISKGARSKRSNLKGVLQAFTPLLMK
CCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHE
WSGKGSMRTLRQAETISLGIPLTGINLYSAMYINELLVRVVEQETPYPALFLDYLTALTE
ECCCCHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LAQSTNPEPALRRFELALLSAMGYGVDFLHCAGSGEMVSPEMTYRYREQQGFMASIRHDP
HHHCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCEECCHHHHHHHHHCCHHHHHCCCC
LMSFKGNELIAISERRFTTPEQLKAAKRFTRIALKPYLGGKPLKSRELFLPRTRSILK
CCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA