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The map label for this gene is yfbU [C]

Identifier: 59712401

GI number: 59712401

Start: 2026398

End: 2026898

Strand: Direct

Name: yfbU [C]

Synonym: VF_1794

Alternate gene names: 59712401

Gene position: 2026398-2026898 (Clockwise)

Preceding gene: 59712400

Following gene: 59712403

Centisome position: 69.94

GC content: 38.32

Gene sequence:

>501_bases
ATGGATATGACAAATGCTCAACGCTTAATCCTTTCAAACCAGTACTACTTAATGTCTCAAATGGATCCGACAAATGCAGA
AAAGTACAAACGCCAACAACTGATTGTTGAACGTGGTTATGAATTACAAATTCGCGAGCTTGATAAAGACTTTGGCTGTA
TTACAGAAACAGAATGTCGTGAAATTATCGACTTCATGGAGATGTACCATGCAATGCAAGAATCTTACAATATGCTTTCT
GAAGAATGCCAAGCAAAAGTAGATGCTCGCCGTCTTCAATTCTTAGGCTTTGATATTGCAACTGAAGCACAACAAGTAAA
CTATGTTCGTTTCTTAACAAGCTCAGAAGGTTTATACCCTCAGTTTGATAAAGCAGACCACCACTTTAATAGCCAAATGC
CAATGCTTGATAAGTACCGTCGTATGCTAACAACATGGCGCAACTGTCCACGCCAATATCACCTATGTTCAACAGAATTA
GCGCAAATTTTTAACGCATAA

Upstream 100 bases:

>100_bases
CACATAACTTAATGTAGATCATGTTCTATGTGTTACATTTACTGTTAATCTAGCTTCAACTTTTTATACAATTTTAATTA
TAATTTTTGAGGTTATCCTA

Downstream 100 bases:

>100_bases
TTCAGCTAACATAAAACCAATTTTAATCCTCGCCTTTGCGGGGATTTTTTATACCCGCGATACAACCACAGAACTAATAA
ACAAAAAATCCTCACTGACG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MDMTNAQRLILSNQYYLMSQMDPTNAEKYKRQQLIVERGYELQIRELDKDFGCITETECREIIDFMEMYHAMQESYNMLS
EECQAKVDARRLQFLGFDIATEAQQVNYVRFLTSSEGLYPQFDKADHHFNSQMPMLDKYRRMLTTWRNCPRQYHLCSTEL
AQIFNA

Sequences:

>Translated_166_residues
MDMTNAQRLILSNQYYLMSQMDPTNAEKYKRQQLIVERGYELQIRELDKDFGCITETECREIIDFMEMYHAMQESYNMLS
EECQAKVDARRLQFLGFDIATEAQQVNYVRFLTSSEGLYPQFDKADHHFNSQMPMLDKYRRMLTTWRNCPRQYHLCSTEL
AQIFNA
>Mature_166_residues
MDMTNAQRLILSNQYYLMSQMDPTNAEKYKRQQLIVERGYELQIRELDKDFGCITETECREIIDFMEMYHAMQESYNMLS
EECQAKVDARRLQFLGFDIATEAQQVNYVRFLTSSEGLYPQFDKADHHFNSQMPMLDKYRRMLTTWRNCPRQYHLCSTEL
AQIFNA

Specific function: Unknown

COG id: COG3013

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0304 family

Homologues:

Organism=Escherichia coli, GI87082081, Length=166, Percent_Identity=57.8313253012048, Blast_Score=209, Evalue=1e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1794_VIBF1 (Q5E3V7)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_205177.1
- ProteinModelPortal:   Q5E3V7
- SMR:   Q5E3V7
- STRING:   Q5E3V7
- GeneID:   3279034
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_1794
- NMPDR:   fig|312309.3.peg.1794
- eggNOG:   COG3013
- HOGENOM:   HBG297202
- OMA:   ADHHFNS
- PhylomeDB:   Q5E3V7
- ProtClustDB:   PRK05445
- BioCyc:   VFIS312309:VF1794-MONOMER
- HAMAP:   MF_00762
- InterPro:   IPR005587
- InterPro:   IPR023146
- InterPro:   IPR023145
- Gene3D:   G3DSA:1.10.3190.10
- Gene3D:   G3DSA:1.10.287.680
- PIRSF:   PIRSF006272
- ProDom:   PD035118

Pfam domain/function: PF03887 YfbU

EC number: NA

Molecular weight: Translated: 19891; Mature: 19891

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
6.6 %Met     (Translated Protein)
9.6 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
6.6 %Met     (Mature Protein)
9.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMTNAQRLILSNQYYLMSQMDPTNAEKYKRQQLIVERGYELQIRELDKDFGCITETECR
CCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCHHHHH
EIIDFMEMYHAMQESYNMLSEECQAKVDARRLQFLGFDIATEAQQVNYVRFLTSSEGLYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCCCCC
QFDKADHHFNSQMPMLDKYRRMLTTWRNCPRQYHLCSTELAQIFNA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDMTNAQRLILSNQYYLMSQMDPTNAEKYKRQQLIVERGYELQIRELDKDFGCITETECR
CCCCHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCHHHHH
EIIDFMEMYHAMQESYNMLSEECQAKVDARRLQFLGFDIATEAQQVNYVRFLTSSEGLYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCCCCC
QFDKADHHFNSQMPMLDKYRRMLTTWRNCPRQYHLCSTELAQIFNA
CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA