Click here to switch to the map view.

The map label for this gene is tfoX2 [H]

Identifier: 59712180

GI number: 59712180

Start: 1762470

End: 1763057

Strand: Direct

Name: tfoX2 [H]

Synonym: VF_1573

Alternate gene names: 59712180

Gene position: 1762470-1763057 (Clockwise)

Preceding gene: 59712179

Following gene: 59712182

Centisome position: 60.83

GC content: 35.03

Gene sequence:

>588_bases
ATGGATAAACCAGTATTAAAAGACTCACTTCGTCTACTATCTTCACTAGGAAAGATCACTTCTCGCTCTATGTTTGGGGG
ATTTGGAATCTTCATTGACGACACCATGTTTGCTCTTGTAGTTCAAGATAAGCTTCATTTAAGAGCAAGTGACGAAACGA
TTAACTTATTTAAAGAACAAGGCTTTGAACCATACGTTTATAAAAAACGTGGATTTCCAGTTGTGACAAAATATTTTGCT
ATATCTCCTGAATGTTGGGATGAACCAGATTCAATTTTGATTCAAGCCGTTGTTGCTTTAGATGTAGCGAAAAAAGATAA
AGAAAAACAAAAATCAGCAGGTCCTTCTCGTATTAAAGATTTACCTAATTTACGACTTGCAACAGAAAGAATGCTGAAGA
AAGCCGGAATTACAACAGTTGAAGAACTGAAAAATACTGGCTCTGTAAATGCTTATAAAGCGATACAGCAAACGCATTCA
AGTTCAGTAAGTGATGAATTATTATGGTCTTTAGAAGGGGCTATAAAAGGAATGCACTGGTCTGTAATTTCTGCCGAAAC
ACGTAATGAATTAAGAAAACAACTATAA

Upstream 100 bases:

>100_bases
ATTTTTACGTTAAAATAACAATACTTAGTTTTCAACTTGCTACTATTTCCTCGGGCTCAGTTGTTTAGTGACATAGACTT
ACTAACCGAGAATTATTGCA

Downstream 100 bases:

>100_bases
TTAATATTGTTTTAGATTCATTTTTATTATGTTGTATTCTATAGCGCATAGAATACAACATAATCACTACTATCAGCCTT
AATCTACAGGCTCTTCATCT

Product: DNA transformation protein TfoX2 (Sxy)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MDKPVLKDSLRLLSSLGKITSRSMFGGFGIFIDDTMFALVVQDKLHLRASDETINLFKEQGFEPYVYKKRGFPVVTKYFA
ISPECWDEPDSILIQAVVALDVAKKDKEKQKSAGPSRIKDLPNLRLATERMLKKAGITTVEELKNTGSVNAYKAIQQTHS
SSVSDELLWSLEGAIKGMHWSVISAETRNELRKQL

Sequences:

>Translated_195_residues
MDKPVLKDSLRLLSSLGKITSRSMFGGFGIFIDDTMFALVVQDKLHLRASDETINLFKEQGFEPYVYKKRGFPVVTKYFA
ISPECWDEPDSILIQAVVALDVAKKDKEKQKSAGPSRIKDLPNLRLATERMLKKAGITTVEELKNTGSVNAYKAIQQTHS
SSVSDELLWSLEGAIKGMHWSVISAETRNELRKQL
>Mature_195_residues
MDKPVLKDSLRLLSSLGKITSRSMFGGFGIFIDDTMFALVVQDKLHLRASDETINLFKEQGFEPYVYKKRGFPVVTKYFA
ISPECWDEPDSILIQAVVALDVAKKDKEKQKSAGPSRIKDLPNLRLATERMLKKAGITTVEELKNTGSVNAYKAIQQTHS
SSVSDELLWSLEGAIKGMHWSVISAETRNELRKQL

Specific function: Unknown

COG id: COG3070

COG function: function code K; Regulator of competence-specific genes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae DNA transformation protein tfoX [H]

Homologues:

Organism=Escherichia coli, GI1787193, Length=179, Percent_Identity=31.8435754189944, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007077
- InterPro:   IPR007076 [H]

Pfam domain/function: PF04994 TfoX_C; PF04993 TfoX_N [H]

EC number: NA

Molecular weight: Translated: 21907; Mature: 21907

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKPVLKDSLRLLSSLGKITSRSMFGGFGIFIDDTMFALVVQDKLHLRASDETINLFKEQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEECCCHHHHHHHHC
GFEPYVYKKRGFPVVTKYFAISPECWDEPDSILIQAVVALDVAKKDKEKQKSAGPSRIKD
CCCCEEEECCCCCEEHHHEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LPNLRLATERMLKKAGITTVEELKNTGSVNAYKAIQQTHSSSVSDELLWSLEGAIKGMHW
CCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
SVISAETRNELRKQL
EEECHHHHHHHHHCC
>Mature Secondary Structure
MDKPVLKDSLRLLSSLGKITSRSMFGGFGIFIDDTMFALVVQDKLHLRASDETINLFKEQ
CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHEECCCHHHHHHHHC
GFEPYVYKKRGFPVVTKYFAISPECWDEPDSILIQAVVALDVAKKDKEKQKSAGPSRIKD
CCCCEEEECCCCCEEHHHEEECCHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
LPNLRLATERMLKKAGITTVEELKNTGSVNAYKAIQQTHSSSVSDELLWSLEGAIKGMHW
CCCCHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHH
SVISAETRNELRKQL
EEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]