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The map label for this gene is phnR [H]

Identifier: 59712137

GI number: 59712137

Start: 1711803

End: 1712498

Strand: Reverse

Name: phnR [H]

Synonym: VF_1530

Alternate gene names: 59712137

Gene position: 1712498-1711803 (Counterclockwise)

Preceding gene: 59712138

Following gene: 59712134

Centisome position: 59.1

GC content: 37.21

Gene sequence:

>696_bases
ATGCAGTATTTAACGATTAAAGATGCAATAGAAGAGCAAATTGATACTGGCATGTTTGAGGCTGGACAAAAGTTGCCTTC
AGAAAGAACGCTAGCTGAAACATTTTCTACAACACGCATTACACTACGTGAAGCCCTTAATCATTTAGCCTTATCAGGTA
AAATATACAAAGAAGAGCGTAGAGGCTGGTTTGTATCAACGGCTAAGTTAATATTTAATCCTATGCAATGTATTGATATT
GCGGAGGCGTGTAAGGAGCAGAAAAGAAATTGCCGAATTGAGGCGCTTTCTTCTCATCGATTGTTAGCAACAAAAGAAAT
GCTGACCGTTTTAAAGTTGTCTCCATTTTCTTACGTCAAACAACAAGTTTCTCTTATCCATATTGATGGAAGAAGGGTTG
CGGTTCAGTACCGATATATTCCAGAGGAAATGACGACATTATTAAGTCATGACGAACAAACGGACGTACTAACTCAATTA
TTGAATAGCTTTGAATATGATTCGGAAAAACATGAGATAGAGGTAGGGATTATTCCTGCATCTCAGCTCGAATCTGATGC
GTTGAATTTAAGTTCTGGAAGTATGTTGTTATCGATCAATCAAGTTGCCTGTAACAAAAGTCAGACTCCTTTTCTATTAC
AGACAATTCGTTGTTGCCATGATGCGATTAATTTGAAAATTAGCCAAACTGCTTAA

Upstream 100 bases:

>100_bases
GAGTGACTATTTTAGTGAAAAAAGGTCAATTATTCAGTGATTCAAATATTCAGCATTATTTAGCAAATGATGTATATGTT
CCTACATTATAGGTTTATTA

Downstream 100 bases:

>100_bases
TTTGTTCAATTAATTCATTTTCAGTTACGGGCTCTGAATCTAATTCAAAAAACGCTTCAGCTCCGCCTTTTAGCATATAA
ACTTGGGTACCACAGTGATC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MQYLTIKDAIEEQIDTGMFEAGQKLPSERTLAETFSTTRITLREALNHLALSGKIYKEERRGWFVSTAKLIFNPMQCIDI
AEACKEQKRNCRIEALSSHRLLATKEMLTVLKLSPFSYVKQQVSLIHIDGRRVAVQYRYIPEEMTTLLSHDEQTDVLTQL
LNSFEYDSEKHEIEVGIIPASQLESDALNLSSGSMLLSINQVACNKSQTPFLLQTIRCCHDAINLKISQTA

Sequences:

>Translated_231_residues
MQYLTIKDAIEEQIDTGMFEAGQKLPSERTLAETFSTTRITLREALNHLALSGKIYKEERRGWFVSTAKLIFNPMQCIDI
AEACKEQKRNCRIEALSSHRLLATKEMLTVLKLSPFSYVKQQVSLIHIDGRRVAVQYRYIPEEMTTLLSHDEQTDVLTQL
LNSFEYDSEKHEIEVGIIPASQLESDALNLSSGSMLLSINQVACNKSQTPFLLQTIRCCHDAINLKISQTA
>Mature_231_residues
MQYLTIKDAIEEQIDTGMFEAGQKLPSERTLAETFSTTRITLREALNHLALSGKIYKEERRGWFVSTAKLIFNPMQCIDI
AEACKEQKRNCRIEALSSHRLLATKEMLTVLKLSPFSYVKQQVSLIHIDGRRVAVQYRYIPEEMTTLLSHDEQTDVLTQL
LNSFEYDSEKHEIEVGIIPASQLESDALNLSSGSMLLSINQVACNKSQTPFLLQTIRCCHDAINLKISQTA

Specific function: Unknown

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790304, Length=139, Percent_Identity=28.7769784172662, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR017722
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 26226; Mature: 26226

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYLTIKDAIEEQIDTGMFEAGQKLPSERTLAETFSTTRITLREALNHLALSGKIYKEER
CCEEEHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RGWFVSTAKLIFNPMQCIDIAEACKEQKRNCRIEALSSHRLLATKEMLTVLKLSPFSYVK
CCEEEEHHHHHHCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCHHHHHH
QQVSLIHIDGRRVAVQYRYIPEEMTTLLSHDEQTDVLTQLLNSFEYDSEKHEIEVGIIPA
HHEEEEEECCCEEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECH
SQLESDALNLSSGSMLLSINQVACNKSQTPFLLQTIRCCHDAINLKISQTA
HHHCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCEEEECCC
>Mature Secondary Structure
MQYLTIKDAIEEQIDTGMFEAGQKLPSERTLAETFSTTRITLREALNHLALSGKIYKEER
CCEEEHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
RGWFVSTAKLIFNPMQCIDIAEACKEQKRNCRIEALSSHRLLATKEMLTVLKLSPFSYVK
CCEEEEHHHHHHCHHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCHHHHHH
QQVSLIHIDGRRVAVQYRYIPEEMTTLLSHDEQTDVLTQLLNSFEYDSEKHEIEVGIIPA
HHEEEEEECCCEEEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECH
SQLESDALNLSSGSMLLSINQVACNKSQTPFLLQTIRCCHDAINLKISQTA
HHHCCCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHHHHCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA