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The map label for this gene is yjgF [C]

Identifier: 59712066

GI number: 59712066

Start: 1615544

End: 1615921

Strand: Direct

Name: yjgF [C]

Synonym: VF_1459

Alternate gene names: 59712066

Gene position: 1615544-1615921 (Clockwise)

Preceding gene: 59712065

Following gene: 59712071

Centisome position: 55.76

GC content: 35.45

Gene sequence:

>378_bases
ATGAAATATATTCAAACTAAAAACTCATTAAAAGCAGCAGGACATTACTCTCAAGCGATAGTACATAATGGGTTAATTTA
CGTATCTGGCCAATTACCAATTAACCCAAACACAGGGGAAAAAATAAACGGCGATATAAGCCAACAAACCCGTCGTGTAT
TAGATAATTTGAACACAATTCTTGAAGAAGTAGGAAGCGATCTTCAACAAGTATTAAAACTGGTTATCTACATTTCAGAC
ATTGATATGTGGGACACGGTTAATGATATTTGCAAAGAGTACTTTATCGATCATAAACCGGTGCGAACCATAGTACCAAC
CAGAGAATTGCACTTTGGATTAAAGATTGAGGTCGATTGCATCGCTATATGTGAATAA

Upstream 100 bases:

>100_bases
AAATCAAACCTGACGAGCTTACCGTTGGAGTCGTAACCGGAAATGGACTCAAAGCAACAAACTCAATTGAACATTTAATC
AATGATATGAGAGGTTAATA

Downstream 100 bases:

>100_bases
CGCCTCATAGCTTAATATTTACGTGCTCAGAAAGTGCGGTAATGACTTTCTGAACTCGCTCTAATCGATAATTATTTTGT
CTAGTGCATATATAGATGGG

Product: endoribonuclease L-PSP, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 125; Mature: 125

Protein sequence:

>125_residues
MKYIQTKNSLKAAGHYSQAIVHNGLIYVSGQLPINPNTGEKINGDISQQTRRVLDNLNTILEEVGSDLQQVLKLVIYISD
IDMWDTVNDICKEYFIDHKPVRTIVPTRELHFGLKIEVDCIAICE

Sequences:

>Translated_125_residues
MKYIQTKNSLKAAGHYSQAIVHNGLIYVSGQLPINPNTGEKINGDISQQTRRVLDNLNTILEEVGSDLQQVLKLVIYISD
IDMWDTVNDICKEYFIDHKPVRTIVPTRELHFGLKIEVDCIAICE
>Mature_125_residues
MKYIQTKNSLKAAGHYSQAIVHNGLIYVSGQLPINPNTGEKINGDISQQTRRVLDNLNTILEEVGSDLQQVLKLVIYISD
IDMWDTVNDICKEYFIDHKPVRTIVPTRELHFGLKIEVDCIAICE

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=122, Percent_Identity=33.6065573770492, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI87082396, Length=125, Percent_Identity=34.4, Blast_Score=87, Evalue=4e-19,
Organism=Escherichia coli, GI87082213, Length=125, Percent_Identity=31.2, Blast_Score=82, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI71982075, Length=121, Percent_Identity=32.2314049586777, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI71982068, Length=121, Percent_Identity=32.2314049586777, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI25148896, Length=121, Percent_Identity=32.2314049586777, Blast_Score=74, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6322138, Length=120, Percent_Identity=32.5, Blast_Score=84, Evalue=8e-18,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=34, Blast_Score=75, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19921376, Length=122, Percent_Identity=29.5081967213115, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14184; Mature: 14184

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKYIQTKNSLKAAGHYSQAIVHNGLIYVSGQLPINPNTGEKINGDISQQTRRVLDNLNTI
CCCCCCCCCHHHCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LEEVGSDLQQVLKLVIYISDIDMWDTVNDICKEYFIDHKPVRTIVPTRELHFGLKIEVDC
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECEEEEEEE
IAICE
EEECC
>Mature Secondary Structure
MKYIQTKNSLKAAGHYSQAIVHNGLIYVSGQLPINPNTGEKINGDISQQTRRVLDNLNTI
CCCCCCCCCHHHCCHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
LEEVGSDLQQVLKLVIYISDIDMWDTVNDICKEYFIDHKPVRTIVPTRELHFGLKIEVDC
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHEECEEEEEEE
IAICE
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]