| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is 59712000
Identifier: 59712000
GI number: 59712000
Start: 1540873
End: 1541331
Strand: Reverse
Name: 59712000
Synonym: VF_1393
Alternate gene names: NA
Gene position: 1541331-1540873 (Counterclockwise)
Preceding gene: 59712001
Following gene: 172087704
Centisome position: 53.19
GC content: 33.33
Gene sequence:
>459_bases ATGCCAAATAAAGAAGCCGTATTGCAGCAGTTATTTTTGCGTGAAGTAAAAGGAACGCCAATTGTTGAACGTAATGAACT TTCTCATTGTGATATTCAAGAAAAAGAACTCGTTACATGGTGTCAGCAAAAAAGAGATTTTTCACTTGAAGAAATCTTTG AATCACACTGGATAAAAACGTGTACGGCTGGCTATATTACGGAGCTTATATTTAGTCAAAATGGGAGCTTAATTGAGTTT ACTTTGTTTGAGCGATTAAAAACGGTAGGGCATTGGGAACTCATTGATGGTTTGCTATACATATCAATTTTTAAGAACGA AAATCAATATGATTTCGTGGTTGTGGCAAATTCATCTGTAAATATTCATTCTGCAATAGAGTACAAGAATAATGAATTGC ACTCTTATCTTAAGTTAGCTCAAACACGAGTATTAGATAAAGTACCTGATGAATATTAA
Upstream 100 bases:
>100_bases AACGACCCAATAAAACGTTTTGATTGAATGAGAGGCTTATCGCAGAAACTGCGGTAAGCCTTTTTTATTATGGATAAACG ACTATTTCAGGAGTGAATGT
Downstream 100 bases:
>100_bases TCAAGGAATGGGTTATTGATAAGTAAAAAACTGATTTATATCAAAGAGATTCTTTGTTAGGGTTGGTGTAATTGATATTC AACTTATTACTAAGATATTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 152; Mature: 151
Protein sequence:
>152_residues MPNKEAVLQQLFLREVKGTPIVERNELSHCDIQEKELVTWCQQKRDFSLEEIFESHWIKTCTAGYITELIFSQNGSLIEF TLFERLKTVGHWELIDGLLYISIFKNENQYDFVVVANSSVNIHSAIEYKNNELHSYLKLAQTRVLDKVPDEY
Sequences:
>Translated_152_residues MPNKEAVLQQLFLREVKGTPIVERNELSHCDIQEKELVTWCQQKRDFSLEEIFESHWIKTCTAGYITELIFSQNGSLIEF TLFERLKTVGHWELIDGLLYISIFKNENQYDFVVVANSSVNIHSAIEYKNNELHSYLKLAQTRVLDKVPDEY >Mature_151_residues PNKEAVLQQLFLREVKGTPIVERNELSHCDIQEKELVTWCQQKRDFSLEEIFESHWIKTCTAGYITELIFSQNGSLIEFT LFERLKTVGHWELIDGLLYISIFKNENQYDFVVVANSSVNIHSAIEYKNNELHSYLKLAQTRVLDKVPDEY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17843; Mature: 17712
Theoretical pI: Translated: 4.87; Mature: 4.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNKEAVLQQLFLREVKGTPIVERNELSHCDIQEKELVTWCQQKRDFSLEEIFESHWIKT CCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH CTAGYITELIFSQNGSLIEFTLFERLKTVGHWELIDGLLYISIFKNENQYDFVVVANSSV HHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHEEEEECCCCCEEEEEEECCCC NIHSAIEYKNNELHSYLKLAQTRVLDKVPDEY CCHHHEECCCHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure PNKEAVLQQLFLREVKGTPIVERNELSHCDIQEKELVTWCQQKRDFSLEEIFESHWIKT CCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH CTAGYITELIFSQNGSLIEFTLFERLKTVGHWELIDGLLYISIFKNENQYDFVVVANSSV HHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCHHHHHHHHEEEEECCCCCEEEEEEECCCC NIHSAIEYKNNELHSYLKLAQTRVLDKVPDEY CCHHHEECCCHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA