| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 172087704
Identifier: 172087704
GI number: 172087704
Start: 1540377
End: 1540772
Strand: Reverse
Name: 172087704
Synonym: VF_2614
Alternate gene names: NA
Gene position: 1540772-1540377 (Counterclockwise)
Preceding gene: 59712000
Following gene: 59711999
Centisome position: 53.18
GC content: 37.12
Gene sequence:
>396_bases ATGAGCACACTTATTTCAAATAGAAATAAACAATTTAGAGCTAAGCTATTATTATGCTTAGTTCTTTTAAGTGTGTTTAT CTGTTTTAGTCAATTGATTGGTGTAACTTCAAGTTGTAAAGAACACTTGATTGAGGCGCAAACAAAAGTACACCAATTAG AGGCGGTGACAGGAAGTGATTCTCAGCCGATAGCGCCTAAATGCGAATTGGTTGAGCACTTATTATCCTTTGAAAATAGC ATGCACGATTTACTTTTAGGTGCTTGGTTATTCATAGCGATTGCTCTCGTTGTTATCCCTTTACTTCATTCACCTCCAAT CTTTATTGGACCCATAGAACGACAAGTTCAGAAGGTTCGGCGTCGGCATCTTAGATTCTGCGTTTTTCTAGAATAA
Upstream 100 bases:
>100_bases TCAAGGAATGGGTTATTGATAAGTAAAAAACTGATTTATATCAAAGAGATTCTTTGTTAGGGTTGGTGTAATTGATATTC AACTTATTACTAAGATATTT
Downstream 100 bases:
>100_bases AAACCTAAGTAATACTAATTTCAGGGATTGCTCGTTAACTATTACGAATTACACCACTTAATTGTTGTGTTTAGGGTTAC GAGTGCATGAATGGAATTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MSTLISNRNKQFRAKLLLCLVLLSVFICFSQLIGVTSSCKEHLIEAQTKVHQLEAVTGSDSQPIAPKCELVEHLLSFENS MHDLLLGAWLFIAIALVVIPLLHSPPIFIGPIERQVQKVRRRHLRFCVFLE
Sequences:
>Translated_131_residues MSTLISNRNKQFRAKLLLCLVLLSVFICFSQLIGVTSSCKEHLIEAQTKVHQLEAVTGSDSQPIAPKCELVEHLLSFENS MHDLLLGAWLFIAIALVVIPLLHSPPIFIGPIERQVQKVRRRHLRFCVFLE >Mature_130_residues STLISNRNKQFRAKLLLCLVLLSVFICFSQLIGVTSSCKEHLIEAQTKVHQLEAVTGSDSQPIAPKCELVEHLLSFENSM HDLLLGAWLFIAIALVVIPLLHSPPIFIGPIERQVQKVRRRHLRFCVFLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14843; Mature: 14712
Theoretical pI: Translated: 8.52; Mature: 8.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLISNRNKQFRAKLLLCLVLLSVFICFSQLIGVTSSCKEHLIEAQTKVHQLEAVTGSD CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC SQPIAPKCELVEHLLSFENSMHDLLLGAWLFIAIALVVIPLLHSPPIFIGPIERQVQKVR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHH RRHLRFCVFLE HHHHHHHHCCC >Mature Secondary Structure STLISNRNKQFRAKLLLCLVLLSVFICFSQLIGVTSSCKEHLIEAQTKVHQLEAVTGSD CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCC SQPIAPKCELVEHLLSFENSMHDLLLGAWLFIAIALVVIPLLHSPPIFIGPIERQVQKVR CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHH RRHLRFCVFLE HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA