| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is pqiB [H]
Identifier: 59711882
GI number: 59711882
Start: 1415695
End: 1418331
Strand: Reverse
Name: pqiB [H]
Synonym: VF_1275
Alternate gene names: 59711882
Gene position: 1418331-1415695 (Counterclockwise)
Preceding gene: 59711883
Following gene: 172087696
Centisome position: 48.95
GC content: 38.15
Gene sequence:
>2637_bases ATGAACCAACCAAAAAATCTTGATTCATCGATTGAGCAAGTCAACATCAAAGAAGAGCGTGGCATTTCACCCCTTTGGAT CCTACCTTTACTCGCTTTATGTCTTGGTGGTTGGCTTGTTTATTCTTCTCTGATGGAAGCTGGACAGCGTATTCAAATCT ATTTTGAAGACGCTCAAGGCTTAATGGCTGGACGTACGACAATTCGTTATCAAGGTCTTGAAGTTGGTATGGTTAAAAAC ATCACCCTTTCAAAGGACCTTTCTAATATTTATGTTGATGCGGATATCTACCCTGAAGCCAGTGACCTATTAAAGGAAAA TACTCAATTTTGGTTAGTAAAACCTCAAGCATCTCTTACAGGTATATCAGGATTAGATGCTCTGGTTTCTGGTAACTACA TCGCTATTTTACCGGGTTCTGGTGCGGCAAAAACAAAATTTACCGCTTTAGCTAACTCTCCTGCTATTCAACCAAACACC ACTGGCTTGAGTGTGACATTACGCTCTAAAGATTTAGGGTCTATTTCTGTTGGCTCAAAAATTTACTATAAAAAAATTCC TATTGGTGAAGTCTACAATTTCAAACTTGACCACAAAACAGACAACGTTCGTATTAAAGCGTTAATTGAAGAACAATATG CACATTTAATCACATCTAAAAGCCGTTTTTGGAATGCGAGTGGTATCGGTGCAAATATTGGTTTTAATGGTGTAGACGTT CAATTTGAAAGTTTATCAGCCCTTATTGGTGGTGCTATTGCTGTTGATTCTCCTGATGATGGTAAAGCCATTGATAACGG GAAGGAATTTCAACTTTACTCTAATATCAAAACTGCAGGACGCGGCATTCCGATTAAAATCACTCTGCCAGATAATAACC AAATCAGTCCAAATGGCTCTGCCATCATGTATCGTGGTTTAGAGATTGGTCAAATAAACAGTTTAAAATTATCTGATGAT AAAAAAGACATTATTGCCTCTGCCACTGTTGAGCCTGCTTTTACGGATTATTTAAACGATGGTTCTCGTTTTGTATTAGA AGAAGCAAAGTTAGGTTTATCTGGTGTTGAAAACATTGGTAACCTTGTTCGAGGTAACTTCCTAACACTGGTTCCAGGTA CAGGTGAACGCTCTCGTGAATTTACTGCAATTCGTAAACCAGAACTGATTAAGCAAGATGCAAAAGCGCTTACTTTCTCT CTGTATGCAGATCGTTCTTTTGGTTTAACCCCTGATACTACTATCTTGTATAAAGGAATTAAGGTCGGCTCGATTACCCA TGTCGCGCTAGTTAATGACAGAGTTAAATTTGATGCAATGGTATTTGAGAAATACAAACACCTTATCAAATCAAACAACA AATTCTTTGTTTCAGGTAGTGTCTCTGCTGAGTTAACTGACTCTGGTTTAAATATTGATGTGCCTCCAACACAAGCCTTA ATTTCTGGTTCGATTAGCTTTACAAGTGAAGGTAAAGGCTATAAACAAAAAAGCTATACCCTATTTAAAAACAGCTCTCT TGCTGAGCTGGCACAATTTAAAACAGAAAAAAGCACAGAACTCACGCTATTTAGTACAGAGTTACCGCCAATCACCAAAA ACAGCCCAATTCTTTATCGTAACCTTGTTGTGGGTAAAGTAACGGATTTCAACTTAGGTAATGATGGCGTTAACATTAAA ATAAATATTGAAAAGCAGTACGCGCATTTAATTCAAGCTGATACGGTTTTCTGGAACTATTCAGGGGTTAATGTAGAAGC GAGTTTAAGCGGTGTTAACATTCAAGCGGCACCATTAATGTCGATGATCCGTGGTGGTATTGGTTTTGATAATATTCAAG GTGTTGAAAATAAACTGGGTAAAAAATGGAAACTTTACTCTAACCTATCTGAAGCCCAAGAATTTGGTAAAATTATCGCG TTTACAGCCAAAGACAGCAATGCGATAGACAAAGGAACACAGATTAAATACAAAGGTGTTTCTGTTGGTGAAGTAAGTAA AATTACACCAAACTTCTCTAGCGATAACGTTTATGTACAAGCTCGTATTTACCCTGAATATGTTGACCAAATTGCAGTTG CAGGTAGCCACTTCTGGGTTGTAGAACCAAGCATTAGCTTAGCTGGTGCAGAGAATCTAGATACCCTACTTGGCAGTTAC ATTCAAGTAACTCCAGGTTCAGGAAAGACGAAAACTCAATTTACGTTATCGGATCAACCACAAGGTGATCAACTCATTTC ATATACATTAGAAGCGCTTTCTCGTGGTTCAGTCAAAGTTGGGACACCTATCCTATTTAGAGAAATCGAAGTTGGTGAAG TGACTGATGTAAGACTTGGTGATTTATCAGATCGCATTATTATCACGATTGGTATTCACTCTGAATTTGCCTACCTTGTT CGAGAAAACAGTGTTTTCTGGAATGTATCAGGTGTAAATATGTCTATTGGTTTAAGCGGTGCAAAAGTTCAAGCCGGTAC GGTAGATAGTATCCTGCGTGGTGGTATTGCTTTCTCTACACCAGATGATGAAACGCTAAAACCACAGGCAAAAGCACATA AATCTTACCTACTGCATAAAACCGCAGAAGAAGATTGGGCATTGTGGAATGCTGCTATTCCAAATCCAAATAAATAA
Upstream 100 bases:
>100_bases GATTTTACTCCCGGCCTTGGTGCTGTGGCTTTTGGTTTAGTAGTCGTATTCACCATGCTAGCAGCCGAAAGTTTTGATTC TCGTTTAATTTGGGATAATT
Downstream 100 bases:
>100_bases GCACTCAAAGAGTTAACTAAATAAGGCTGTTGATGTTCATTCAACTGCCTTTTTCTTATTCATCAACACACTATTTCATC TATTATCCTTAATTCCATTT
Product: paraquat-inducible protein B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 878; Mature: 878
Protein sequence:
>878_residues MNQPKNLDSSIEQVNIKEERGISPLWILPLLALCLGGWLVYSSLMEAGQRIQIYFEDAQGLMAGRTTIRYQGLEVGMVKN ITLSKDLSNIYVDADIYPEASDLLKENTQFWLVKPQASLTGISGLDALVSGNYIAILPGSGAAKTKFTALANSPAIQPNT TGLSVTLRSKDLGSISVGSKIYYKKIPIGEVYNFKLDHKTDNVRIKALIEEQYAHLITSKSRFWNASGIGANIGFNGVDV QFESLSALIGGAIAVDSPDDGKAIDNGKEFQLYSNIKTAGRGIPIKITLPDNNQISPNGSAIMYRGLEIGQINSLKLSDD KKDIIASATVEPAFTDYLNDGSRFVLEEAKLGLSGVENIGNLVRGNFLTLVPGTGERSREFTAIRKPELIKQDAKALTFS LYADRSFGLTPDTTILYKGIKVGSITHVALVNDRVKFDAMVFEKYKHLIKSNNKFFVSGSVSAELTDSGLNIDVPPTQAL ISGSISFTSEGKGYKQKSYTLFKNSSLAELAQFKTEKSTELTLFSTELPPITKNSPILYRNLVVGKVTDFNLGNDGVNIK INIEKQYAHLIQADTVFWNYSGVNVEASLSGVNIQAAPLMSMIRGGIGFDNIQGVENKLGKKWKLYSNLSEAQEFGKIIA FTAKDSNAIDKGTQIKYKGVSVGEVSKITPNFSSDNVYVQARIYPEYVDQIAVAGSHFWVVEPSISLAGAENLDTLLGSY IQVTPGSGKTKTQFTLSDQPQGDQLISYTLEALSRGSVKVGTPILFREIEVGEVTDVRLGDLSDRIIITIGIHSEFAYLV RENSVFWNVSGVNMSIGLSGAKVQAGTVDSILRGGIAFSTPDDETLKPQAKAHKSYLLHKTAEEDWALWNAAIPNPNK
Sequences:
>Translated_878_residues MNQPKNLDSSIEQVNIKEERGISPLWILPLLALCLGGWLVYSSLMEAGQRIQIYFEDAQGLMAGRTTIRYQGLEVGMVKN ITLSKDLSNIYVDADIYPEASDLLKENTQFWLVKPQASLTGISGLDALVSGNYIAILPGSGAAKTKFTALANSPAIQPNT TGLSVTLRSKDLGSISVGSKIYYKKIPIGEVYNFKLDHKTDNVRIKALIEEQYAHLITSKSRFWNASGIGANIGFNGVDV QFESLSALIGGAIAVDSPDDGKAIDNGKEFQLYSNIKTAGRGIPIKITLPDNNQISPNGSAIMYRGLEIGQINSLKLSDD KKDIIASATVEPAFTDYLNDGSRFVLEEAKLGLSGVENIGNLVRGNFLTLVPGTGERSREFTAIRKPELIKQDAKALTFS LYADRSFGLTPDTTILYKGIKVGSITHVALVNDRVKFDAMVFEKYKHLIKSNNKFFVSGSVSAELTDSGLNIDVPPTQAL ISGSISFTSEGKGYKQKSYTLFKNSSLAELAQFKTEKSTELTLFSTELPPITKNSPILYRNLVVGKVTDFNLGNDGVNIK INIEKQYAHLIQADTVFWNYSGVNVEASLSGVNIQAAPLMSMIRGGIGFDNIQGVENKLGKKWKLYSNLSEAQEFGKIIA FTAKDSNAIDKGTQIKYKGVSVGEVSKITPNFSSDNVYVQARIYPEYVDQIAVAGSHFWVVEPSISLAGAENLDTLLGSY IQVTPGSGKTKTQFTLSDQPQGDQLISYTLEALSRGSVKVGTPILFREIEVGEVTDVRLGDLSDRIIITIGIHSEFAYLV RENSVFWNVSGVNMSIGLSGAKVQAGTVDSILRGGIAFSTPDDETLKPQAKAHKSYLLHKTAEEDWALWNAAIPNPNK >Mature_878_residues MNQPKNLDSSIEQVNIKEERGISPLWILPLLALCLGGWLVYSSLMEAGQRIQIYFEDAQGLMAGRTTIRYQGLEVGMVKN ITLSKDLSNIYVDADIYPEASDLLKENTQFWLVKPQASLTGISGLDALVSGNYIAILPGSGAAKTKFTALANSPAIQPNT TGLSVTLRSKDLGSISVGSKIYYKKIPIGEVYNFKLDHKTDNVRIKALIEEQYAHLITSKSRFWNASGIGANIGFNGVDV QFESLSALIGGAIAVDSPDDGKAIDNGKEFQLYSNIKTAGRGIPIKITLPDNNQISPNGSAIMYRGLEIGQINSLKLSDD KKDIIASATVEPAFTDYLNDGSRFVLEEAKLGLSGVENIGNLVRGNFLTLVPGTGERSREFTAIRKPELIKQDAKALTFS LYADRSFGLTPDTTILYKGIKVGSITHVALVNDRVKFDAMVFEKYKHLIKSNNKFFVSGSVSAELTDSGLNIDVPPTQAL ISGSISFTSEGKGYKQKSYTLFKNSSLAELAQFKTEKSTELTLFSTELPPITKNSPILYRNLVVGKVTDFNLGNDGVNIK INIEKQYAHLIQADTVFWNYSGVNVEASLSGVNIQAAPLMSMIRGGIGFDNIQGVENKLGKKWKLYSNLSEAQEFGKIIA FTAKDSNAIDKGTQIKYKGVSVGEVSKITPNFSSDNVYVQARIYPEYVDQIAVAGSHFWVVEPSISLAGAENLDTLLGSY IQVTPGSGKTKTQFTLSDQPQGDQLISYTLEALSRGSVKVGTPILFREIEVGEVTDVRLGDLSDRIIITIGIHSEFAYLV RENSVFWNVSGVNMSIGLSGAKVQAGTVDSILRGGIAFSTPDDETLKPQAKAHKSYLLHKTAEEDWALWNAAIPNPNK
Specific function: Unknown
COG id: COG3008
COG function: function code R; Paraquat-inducible protein B
Gene ontology:
Cell location: Membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pqiB family [H]
Homologues:
Organism=Escherichia coli, GI87081984, Length=872, Percent_Identity=36.697247706422, Blast_Score=605, Evalue=1e-174, Organism=Escherichia coli, GI1787184, Length=380, Percent_Identity=28.6842105263158, Blast_Score=165, Evalue=1e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003399 [H]
Pfam domain/function: PF02470 MCE [H]
EC number: NA
Molecular weight: Translated: 95570; Mature: 95570
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.1 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQPKNLDSSIEQVNIKEERGISPLWILPLLALCLGGWLVYSSLMEAGQRIQIYFEDAQG CCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC LMAGRTTIRYQGLEVGMVKNITLSKDLSNIYVDADIYPEASDLLKENTQFWLVKPQASLT CEECCEEEEEECEEEEEEECEEEECCCCEEEEEEECCCCHHHHHHCCCEEEEECCCCCCC GISGLDALVSGNYIAILPGSGAAKTKFTALANSPAIQPNTTGLSVTLRSKDLGSISVGSK CCCCCHHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCE IYYKKIPIGEVYNFKLDHKTDNVRIKALIEEQYAHLITSKSRFWNASGIGANIGFNGVDV EEEEECCCCCEEEEEECCCCCCEEEEEEEHHHHHHHHHCHHHEECCCCCCCCCCCCCEEE QFESLSALIGGAIAVDSPDDGKAIDNGKEFQLYSNIKTAGRGIPIKITLPDNNQISPNGS EHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEEECCCCCCCCCCC AIMYRGLEIGQINSLKLSDDKKDIIASATVEPAFTDYLNDGSRFVLEEAKLGLSGVENIG EEEEECEEECCCCEEEECCCCHHEEEECCCCCHHHHHHCCCCEEEEEHHHCCCHHHHHHH NLVRGNFLTLVPGTGERSREFTAIRKPELIKQDAKALTFSLYADRSFGLTPDTTILYKGI HHHCCCEEEEECCCCCCCCCEEECCCCHHHHHCHHEEEEEEEECCCCCCCCCCEEEEECE KVGSITHVALVNDRVKFDAMVFEKYKHLIKSNNKFFVSGSVSAELTDSGLNIDVPPTQAL EECCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEECCCCCHHH ISGSISFTSEGKGYKQKSYTLFKNSSLAELAQFKTEKSTELTLFSTELPPITKNSPILYR HCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE NLVVGKVTDFNLGNDGVNIKINIEKQYAHLIQADTVFWNYSGVNVEASLSGVNIQAAPLM EEEEEEEEECCCCCCCEEEEEEEEHHHHHHEEECEEEEEECCCEEEEEECCCEEEHHHHH SMIRGGIGFDNIQGVENKLGKKWKLYSNLSEAQEFGKIIAFTAKDSNAIDKGTQIKYKGV HHHHCCCCCCCCCCHHHHCCCEEEEHHCHHHHHHCCEEEEEEECCCCCCCCCCEEEEECC SVGEVSKITPNFSSDNVYVQARIYPEYVDQIAVAGSHFWVVEPSISLAGAENLDTLLGSY CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEECCCCEECCCCCHHHHCCCE IQVTPGSGKTKTQFTLSDQPQGDQLISYTLEALSRGSVKVGTPILFREIEVGEVTDVRLG EEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEC DLSDRIIITIGIHSEFAYLVRENSVFWNVSGVNMSIGLSGAKVQAGTVDSILRGGIAFST CCCCEEEEEEEECCCEEEEEECCEEEEEEECCEEEEECCCCEEECCCHHHHHHCCEEECC PDDETLKPQAKAHKSYLLHKTAEEDWALWNAAIPNPNK CCCCCCCCHHHHHHHHEEECCCCCCCEEEECCCCCCCC >Mature Secondary Structure MNQPKNLDSSIEQVNIKEERGISPLWILPLLALCLGGWLVYSSLMEAGQRIQIYFEDAQG CCCCCCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC LMAGRTTIRYQGLEVGMVKNITLSKDLSNIYVDADIYPEASDLLKENTQFWLVKPQASLT CEECCEEEEEECEEEEEEECEEEECCCCEEEEEEECCCCHHHHHHCCCEEEEECCCCCCC GISGLDALVSGNYIAILPGSGAAKTKFTALANSPAIQPNTTGLSVTLRSKDLGSISVGSK CCCCCHHHHCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEECCCCCCEECCCE IYYKKIPIGEVYNFKLDHKTDNVRIKALIEEQYAHLITSKSRFWNASGIGANIGFNGVDV EEEEECCCCCEEEEEECCCCCCEEEEEEEHHHHHHHHHCHHHEECCCCCCCCCCCCCEEE QFESLSALIGGAIAVDSPDDGKAIDNGKEFQLYSNIKTAGRGIPIKITLPDNNQISPNGS EHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEECHHHCCCCEEEEEEECCCCCCCCCCC AIMYRGLEIGQINSLKLSDDKKDIIASATVEPAFTDYLNDGSRFVLEEAKLGLSGVENIG EEEEECEEECCCCEEEECCCCHHEEEECCCCCHHHHHHCCCCEEEEEHHHCCCHHHHHHH NLVRGNFLTLVPGTGERSREFTAIRKPELIKQDAKALTFSLYADRSFGLTPDTTILYKGI HHHCCCEEEEECCCCCCCCCEEECCCCHHHHHCHHEEEEEEEECCCCCCCCCCEEEEECE KVGSITHVALVNDRVKFDAMVFEKYKHLIKSNNKFFVSGSVSAELTDSGLNIDVPPTQAL EECCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEEECCCCEECCCCCHHH ISGSISFTSEGKGYKQKSYTLFKNSSLAELAQFKTEKSTELTLFSTELPPITKNSPILYR HCCCEEEECCCCCCCCCCEEEEECCCHHHHHHHCCCCCCEEEEEECCCCCCCCCCCEEEE NLVVGKVTDFNLGNDGVNIKINIEKQYAHLIQADTVFWNYSGVNVEASLSGVNIQAAPLM EEEEEEEEECCCCCCCEEEEEEEEHHHHHHEEECEEEEEECCCEEEEEECCCEEEHHHHH SMIRGGIGFDNIQGVENKLGKKWKLYSNLSEAQEFGKIIAFTAKDSNAIDKGTQIKYKGV HHHHCCCCCCCCCCHHHHCCCEEEEHHCHHHHHHCCEEEEEEECCCCCCCCCCEEEEECC SVGEVSKITPNFSSDNVYVQARIYPEYVDQIAVAGSHFWVVEPSISLAGAENLDTLLGSY CCCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCEEEEECCCCEECCCCCHHHHCCCE IQVTPGSGKTKTQFTLSDQPQGDQLISYTLEALSRGSVKVGTPILFREIEVGEVTDVRLG EEEECCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEEC DLSDRIIITIGIHSEFAYLVRENSVFWNVSGVNMSIGLSGAKVQAGTVDSILRGGIAFST CCCCEEEEEEEECCCEEEEEECCEEEEEEECCEEEEECCCCEEECCCHHHHHHCCEEECC PDDETLKPQAKAHKSYLLHKTAEEDWALWNAAIPNPNK CCCCCCCCHHHHHHHHEEECCCCCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]