| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
Click here to switch to the map view.
The map label for this gene is yehS [H]
Identifier: 59711760
GI number: 59711760
Start: 1278473
End: 1278892
Strand: Direct
Name: yehS [H]
Synonym: VF_1153
Alternate gene names: 59711760
Gene position: 1278473-1278892 (Clockwise)
Preceding gene: 59711759
Following gene: 59711763
Centisome position: 44.12
GC content: 34.76
Gene sequence:
>420_bases ATGATTGCATTGTTTGCTGCAGCTGATCTGAAAGTAACTCGTGAAGAAGTATGTAACTGGCTGAAAGCTGATGACGATAA AGATTACAAAAGCTGTCAAGATGTACAATTAGCAACGTTCTTAAATGGTTTAATTAACGATAAACGTGGTAAGCGTGAAG GCGAACAACCAAAGCCTGAAGAAAAGTTAACAAACAATATTATTCTGAAGAAACTACAAATTGCTTTGAACCTTAAAGCT GATGAGGTTTTAGATCTTCTAAAATTAGTTAACTTTCGTTTAAGTAAGCATGAGTTAAGTGCTTTCTTCCGTAAACCAGA TCATAAACATTACCGTGTGTGTAAAGATCAAGTATTACGTAACTTCTTACAAGCTGTACAACAAAACTTACGTGGCGAAT CAACAGAAGAAGCTAAGTAA
Upstream 100 bases:
>100_bases AGTCTGCACCTAATTTAAATTAATACATTTAGGATCTACCTTGACTAATAACGACATTCTACGACGCATTCGCTACACAT TCGATTTCAACGATTCAAAA
Downstream 100 bases:
>100_bases TTCGTATAAGCTCTCTATTTAATAGAGAATGAATAAAAAAACCACTGAATAATCAGTGGTTTTTTTGTAGAGTTAAAAGC TCCATTGCATACTCATCACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 139; Mature: 139
Protein sequence:
>139_residues MIALFAAADLKVTREEVCNWLKADDDKDYKSCQDVQLATFLNGLINDKRGKREGEQPKPEEKLTNNIILKKLQIALNLKA DEVLDLLKLVNFRLSKHELSAFFRKPDHKHYRVCKDQVLRNFLQAVQQNLRGESTEEAK
Sequences:
>Translated_139_residues MIALFAAADLKVTREEVCNWLKADDDKDYKSCQDVQLATFLNGLINDKRGKREGEQPKPEEKLTNNIILKKLQIALNLKA DEVLDLLKLVNFRLSKHELSAFFRKPDHKHYRVCKDQVLRNFLQAVQQNLRGESTEEAK >Mature_139_residues MIALFAAADLKVTREEVCNWLKADDDKDYKSCQDVQLATFLNGLINDKRGKREGEQPKPEEKLTNNIILKKLQIALNLKA DEVLDLLKLVNFRLSKHELSAFFRKPDHKHYRVCKDQVLRNFLQAVQQNLRGESTEEAK
Specific function: Unknown
COG id: COG4807
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788443, Length=127, Percent_Identity=42.5196850393701, Blast_Score=120, Evalue=4e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009921 [H]
Pfam domain/function: PF07308 DUF1456 [H]
EC number: NA
Molecular weight: Translated: 16109; Mature: 16109
Theoretical pI: Translated: 8.85; Mature: 8.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALFAAADLKVTREEVCNWLKADDDKDYKSCQDVQLATFLNGLINDKRGKREGEQPKPE CEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH EKLTNNIILKKLQIALNLKADEVLDLLKLVNFRLSKHELSAFFRKPDHKHYRVCKDQVLR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH NFLQAVQQNLRGESTEEAK HHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MIALFAAADLKVTREEVCNWLKADDDKDYKSCQDVQLATFLNGLINDKRGKREGEQPKPE CEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH EKLTNNIILKKLQIALNLKADEVLDLLKLVNFRLSKHELSAFFRKPDHKHYRVCKDQVLR HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH NFLQAVQQNLRGESTEEAK HHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]