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The map label for this gene is yciO [H]

Identifier: 59711642

GI number: 59711642

Start: 1139654

End: 1140274

Strand: Direct

Name: yciO [H]

Synonym: VF_1035

Alternate gene names: 59711642

Gene position: 1139654-1140274 (Clockwise)

Preceding gene: 59711641

Following gene: 59711645

Centisome position: 39.33

GC content: 39.29

Gene sequence:

>621_bases
ATGAGCCAATTTTTTTACGTACATCCAGAAAACCCACAAGCACGTCTAATCAATCAAGCCGTGGCGATTATTCGTGATGG
CGGTGTGGTAATTTATCCAACAGATTCAGGTTATGCGTTGGGTTGTCAACTTGAGAATAAACAAGCATTAGAGCGAATCT
GCCAGATCCGTCGCTTAGATGACAAACATAATTTTACGTTACTGTGTCGTGATTTATCTGAGCTATCTATTTATGCTCGT
GTTGATAACAGTATTTTCCGATTACTTAAAAATAACACGCCAGGCGCATACACTTTTATTTTTAAAGGAACAAAGGAAGT
GCCTCGTCGTTTAATGAACCCAAAACGTAAGACCATTGGTATGCGTGTACCGGATAATAAAATTGCTCTGGATCTGTTAG
AGGCGTTAGGTGAGCCACTGATGTCTACAACATTGATTTTACCGGGTAATGAAATGGCAGAATCCGATCCTGAAGCAATT
CGAGATCAATTAGAACATGCCGTTGATTTAATTATGAATGGTGGTTATTTAGGTGAACAACCAACCACAGTAATCGACTT
TAGTGATGATGATATTAAAATTGCTCGAGTTGGTGCTGGTGATCCAACACCGTTTGAATAA

Upstream 100 bases:

>100_bases
TGGCAAAAATGGGATATACCAAGCTGAAATAGAAAATGGATTTAGTATACAACTAAAATAAAAACCAAATATCACTATGA
CCTGCTAAGCAGGAGGGATT

Downstream 100 bases:

>100_bases
TTAATAAATTATCGAAGTAGCCAGACAGTTGTTCTGGCTATTTTTTTATCGGTGTTATAACCACTTATCTACGACCTGCA
GTAATTGTGTTTTAGATACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHPENPQARLINQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELSIYAR
VDNSIFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMSTTLILPGNEMAESDPEAI
RDQLEHAVDLIMNGGYLGEQPTTVIDFSDDDIKIARVGAGDPTPFE

Sequences:

>Translated_206_residues
MSQFFYVHPENPQARLINQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELSIYAR
VDNSIFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMSTTLILPGNEMAESDPEAI
RDQLEHAVDLIMNGGYLGEQPTTVIDFSDDDIKIARVGAGDPTPFE
>Mature_205_residues
SQFFYVHPENPQARLINQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLDDKHNFTLLCRDLSELSIYARV
DNSIFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIGMRVPDNKIALDLLEALGEPLMSTTLILPGNEMAESDPEAIR
DQLEHAVDLIMNGGYLGEQPTTVIDFSDDDIKIARVGAGDPTPFE

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=70.7317073170732, Blast_Score=313, Evalue=4e-87,
Organism=Escherichia coli, GI2367210, Length=144, Percent_Identity=25.6944444444444, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23093; Mature: 22962

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHPENPQARLINQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLD
CCCEEEEECCCCHHHHHHHHHHEEECCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
DKHNFTLLCRDLSELSIYARVDNSIFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIG
CCCCEEEEEECHHHEEEEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHHHCC
MRVPDNKIALDLLEALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGYLGEQ
EECCCCHHHHHHHHHHCCHHHHEEEEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PTTVIDFSDDDIKIARVGAGDPTPFE
CCEEEEECCCCEEEEEECCCCCCCCC
>Mature Secondary Structure 
SQFFYVHPENPQARLINQAVAIIRDGGVVIYPTDSGYALGCQLENKQALERICQIRRLD
CCEEEEECCCCHHHHHHHHHHEEECCCEEEEECCCCEEEEEEECCHHHHHHHHHHHCCC
DKHNFTLLCRDLSELSIYARVDNSIFRLLKNNTPGAYTFIFKGTKEVPRRLMNPKRKTIG
CCCCEEEEEECHHHEEEEEEHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHCCCCHHHCC
MRVPDNKIALDLLEALGEPLMSTTLILPGNEMAESDPEAIRDQLEHAVDLIMNGGYLGEQ
EECCCCHHHHHHHHHHCCHHHHEEEEECCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
PTTVIDFSDDDIKIARVGAGDPTPFE
CCEEEEECCCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]