Click here to switch to the map view.

The map label for this gene is trpH [H]

Identifier: 59711641

GI number: 59711641

Start: 1138741

End: 1139580

Strand: Direct

Name: trpH [H]

Synonym: VF_1034

Alternate gene names: 59711641

Gene position: 1138741-1139580 (Clockwise)

Preceding gene: 59711628

Following gene: 59711642

Centisome position: 39.3

GC content: 41.55

Gene sequence:

>840_bases
ATGAAAATAGACCTACATAGTCACACAACTGCGTCAGATGGACGCTTATCACCCACAGAATTAGTTGAAAGAGCGGTTAG
TTTTGATGTGAAGGTGCTTGCTATTACTGATCATGACTCTGTTGCGGGTCTTGATGAAGCTCATGCGGCAATTAAAGATC
AAAATTTACCTTTGCAATTGATAAATGGAATTGAAATATCGACGTTATGGAGCAATAAAGACATTCATGTTGTTGGTTTA
AACTTAGATATTCACCACCCTGATCTCATTGAGCTAATTAAAAATCAAGAAGCTCGAAGAGATGCTCGTGCAATTAAAAT
GGCAGAACGCTTAGAGAAAGCGGGGTACGAAGGGGCATTAGAAGGAGCAAAAGCATTAGCTGGAGACGGTACATTAACTC
GTGCTCATTTTGGTAAGTGGTTAGTTGATGAAGGTCACGCTAAAACAATGCAGGCGGTATTTAAAAAATTCTTAACTCGC
AATAACATAGGTTATGTGCCGCCAGATTGGTGTACGATTGAAGAAGCCGTTAATGTGATTCATAAGGCCGGTGGAGTTGC
AGTACTTGCTCATCCTGGTCGCTATAAGTTAACAGCAAAATGGATAAAACGTTTATTAGCTGCGTTTGTTGAGGCAAAAG
GCGATGCGATGGAAGTTGCATTACCGCAGCAAGGGGTGCAAGAGCGTCGAGTTCTTGCTGATTATGCAATTCAATTTGAA
TTAGAAGCTTCCCAAGGCTCTGATTTTCATTACTCATCGCCTTGGACGGAGTTAGGGCGAAATTTATGGTTGCCAGAAGG
AGTCGTTCCTGTTTGGCAAAAATGGGATATACCAAGCTGA

Upstream 100 bases:

>100_bases
GTGACATAAAGTACCTATTGTTGACCAATTTCAATTTGGTGAGAAAGTGTTTAACTGTGTACTAGTAAACTAGTGCGCAA
GAAGAAAGTCAAGAATAATT

Downstream 100 bases:

>100_bases
AATAGAAAATGGATTTAGTATACAACTAAAATAAAAACCAAATATCACTATGACCTGCTAAGCAGGAGGGATTATGAGCC
AATTTTTTTACGTACATCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKIDLHSHTTASDGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKDQNLPLQLINGIEISTLWSNKDIHVVGL
NLDIHHPDLIELIKNQEARRDARAIKMAERLEKAGYEGALEGAKALAGDGTLTRAHFGKWLVDEGHAKTMQAVFKKFLTR
NNIGYVPPDWCTIEEAVNVIHKAGGVAVLAHPGRYKLTAKWIKRLLAAFVEAKGDAMEVALPQQGVQERRVLADYAIQFE
LEASQGSDFHYSSPWTELGRNLWLPEGVVPVWQKWDIPS

Sequences:

>Translated_279_residues
MKIDLHSHTTASDGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKDQNLPLQLINGIEISTLWSNKDIHVVGL
NLDIHHPDLIELIKNQEARRDARAIKMAERLEKAGYEGALEGAKALAGDGTLTRAHFGKWLVDEGHAKTMQAVFKKFLTR
NNIGYVPPDWCTIEEAVNVIHKAGGVAVLAHPGRYKLTAKWIKRLLAAFVEAKGDAMEVALPQQGVQERRVLADYAIQFE
LEASQGSDFHYSSPWTELGRNLWLPEGVVPVWQKWDIPS
>Mature_279_residues
MKIDLHSHTTASDGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKDQNLPLQLINGIEISTLWSNKDIHVVGL
NLDIHHPDLIELIKNQEARRDARAIKMAERLEKAGYEGALEGAKALAGDGTLTRAHFGKWLVDEGHAKTMQAVFKKFLTR
NNIGYVPPDWCTIEEAVNVIHKAGGVAVLAHPGRYKLTAKWIKRLLAAFVEAKGDAMEVALPQQGVQERRVLADYAIQFE
LEASQGSDFHYSSPWTELGRNLWLPEGVVPVWQKWDIPS

Specific function: Unknown

COG id: COG0613

COG function: function code R; Predicted metal-dependent phosphoesterases (PHP family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trpH family [H]

Homologues:

Organism=Escherichia coli, GI1787520, Length=275, Percent_Identity=59.2727272727273, Blast_Score=326, Evalue=1e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004013
- InterPro:   IPR003141
- InterPro:   IPR016195 [H]

Pfam domain/function: PF02811 PHP [H]

EC number: NA

Molecular weight: Translated: 30957; Mature: 30957

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIDLHSHTTASDGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKDQNLPLQL
CEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCHHH
INGIEISTLWSNKDIHVVGLNLDIHHPDLIELIKNQEARRDARAIKMAERLEKAGYEGAL
HCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
EGAKALAGDGTLTRAHFGKWLVDEGHAKTMQAVFKKFLTRNNIGYVPPDWCTIEEAVNVI
HHHHHHCCCCCEEHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
HKAGGVAVLAHPGRYKLTAKWIKRLLAAFVEAKGDAMEVALPQQGVQERRVLADYAIQFE
HHCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEEEEE
LEASQGSDFHYSSPWTELGRNLWLPEGVVPVWQKWDIPS
EECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MKIDLHSHTTASDGRLSPTELVERAVSFDVKVLAITDHDSVAGLDEAHAAIKDQNLPLQL
CEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHCCCCCCHHH
INGIEISTLWSNKDIHVVGLNLDIHHPDLIELIKNQEARRDARAIKMAERLEKAGYEGAL
HCCEEEEEEECCCCEEEEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHH
EGAKALAGDGTLTRAHFGKWLVDEGHAKTMQAVFKKFLTRNNIGYVPPDWCTIEEAVNVI
HHHHHHCCCCCEEHHHHCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
HKAGGVAVLAHPGRYKLTAKWIKRLLAAFVEAKGDAMEVALPQQGVQERRVLADYAIQFE
HHCCCEEEEECCCCEEHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHEEEEEE
LEASQGSDFHYSSPWTELGRNLWLPEGVVPVWQKWDIPS
EECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]