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The map label for this gene is ychA [C]

Identifier: 59711378

GI number: 59711378

Start: 840720

End: 841532

Strand: Direct

Name: ychA [C]

Synonym: VF_0771

Alternate gene names: 59711378

Gene position: 840720-841532 (Clockwise)

Preceding gene: 59711377

Following gene: 59711379

Centisome position: 29.01

GC content: 36.53

Gene sequence:

>813_bases
ATGTTCCAACTGTGTGATGAAAATTTAGATGAACGCACTTTAGCTGAAGGAGCATTAGAGCTTAATTTAGCGATAAACCC
CGATACTGAAATACATTGGGCTAAACATAAATTACAGCAGATGTGCCAAGAAGCTGAGCAAGTGCTTGTTCATGAGCCAA
ATGGTGAACTACGCTTAGAGCGTCTTATTCAATTGTTTTATGTTGAATGGGGTTATTGCGGAGACGTGAATACTTATTTT
AATTCTGAGAATGCATTTATTGAACATGTACTCAAAGAAAAAAAAGGCATTCCTGTCACCTTAGGCGCTGTATTTTTGTA
TTTATGCCAATACATGGGTTTTCCAGTTAGTGCGATTAATTTCCCTACTCAACTCGTATTACAAATAGAGTGGCCAAATA
AAAAAACGCAATATTTTAATCCGTTTGATGGGCAATATTTAAGTCAACACTTGATGACGGCATGGTTAATAGGCTACGGT
GGTCCATTAGCTACAATTCAACCATCACACTTGGAAAAAGTGGATAATTCTACCTTACTTGGTCGCTTACTTGCTGTTAT
TAAAACTGCTTGTATCCGTGAAAAGAACTTTTCATTTGCATTAAAATGCAGTGATTTGGCACTGACAATGGTGCCAGATG
ATCCGTTTGAAATTCGTGATAGAGGCTTAATCTATCAACAATTGCATTGTAATGATGCTGCGAAAAATGATTTAGAATAT
TTTATTGAACAGTGCCCAAATGACCCATCAGTTTTACTGATGAAAGAGCAAGTTCAATTATTACTTGAACAACACCCTAC
CGTTCTCCATTAA

Upstream 100 bases:

>100_bases
ACAAAGTCTTTAAGACCTTTGCATTTTTAGGTGCAATGGGTTGGTTAATGGTTGCTGCTAAAATTGCGGTAACAAAAGTA
CCAACGTTCTTGGGGTAATT

Downstream 100 bases:

>100_bases
GAGTGAAGATAATGCAAAATCAAAAAACAGTAAAAATTGGCAATATCGATGTAGCGAATGATAAGCCGTTTACCTTATTT
GCCGGTATGAACGTATTAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MFQLCDENLDERTLAEGALELNLAINPDTEIHWAKHKLQQMCQEAEQVLVHEPNGELRLERLIQLFYVEWGYCGDVNTYF
NSENAFIEHVLKEKKGIPVTLGAVFLYLCQYMGFPVSAINFPTQLVLQIEWPNKKTQYFNPFDGQYLSQHLMTAWLIGYG
GPLATIQPSHLEKVDNSTLLGRLLAVIKTACIREKNFSFALKCSDLALTMVPDDPFEIRDRGLIYQQLHCNDAAKNDLEY
FIEQCPNDPSVLLMKEQVQLLLEQHPTVLH

Sequences:

>Translated_270_residues
MFQLCDENLDERTLAEGALELNLAINPDTEIHWAKHKLQQMCQEAEQVLVHEPNGELRLERLIQLFYVEWGYCGDVNTYF
NSENAFIEHVLKEKKGIPVTLGAVFLYLCQYMGFPVSAINFPTQLVLQIEWPNKKTQYFNPFDGQYLSQHLMTAWLIGYG
GPLATIQPSHLEKVDNSTLLGRLLAVIKTACIREKNFSFALKCSDLALTMVPDDPFEIRDRGLIYQQLHCNDAAKNDLEY
FIEQCPNDPSVLLMKEQVQLLLEQHPTVLH
>Mature_270_residues
MFQLCDENLDERTLAEGALELNLAINPDTEIHWAKHKLQQMCQEAEQVLVHEPNGELRLERLIQLFYVEWGYCGDVNTYF
NSENAFIEHVLKEKKGIPVTLGAVFLYLCQYMGFPVSAINFPTQLVLQIEWPNKKTQYFNPFDGQYLSQHLMTAWLIGYG
GPLATIQPSHLEKVDNSTLLGRLLAVIKTACIREKNFSFALKCSDLALTMVPDDPFEIRDRGLIYQQLHCNDAAKNDLEY
FIEQCPNDPSVLLMKEQVQLLLEQHPTVLH

Specific function: Unknown

COG id: COG2912

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0162 family [H]

Homologues:

Organism=Escherichia coli, GI1787465, Length=270, Percent_Identity=36.2962962962963, Blast_Score=181, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31030; Mature: 31030

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQLCDENLDERTLAEGALELNLAINPDTEIHWAKHKLQQMCQEAEQVLVHEPNGELRLE
CCCCCCCCCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHH
RLIQLFYVEWGYCGDVNTYFNSENAFIEHVLKEKKGIPVTLGAVFLYLCQYMGFPVSAIN
HHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCHHCC
FPTQLVLQIEWPNKKTQYFNPFDGQYLSQHLMTAWLIGYGGPLATIQPSHLEKVDNSTLL
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHH
GRLLAVIKTACIREKNFSFALKCSDLALTMVPDDPFEIRDRGLIYQQLHCNDAAKNDLEY
HHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCHHHHCCCEEEEEECCCCCHHHHHHH
FIEQCPNDPSVLLMKEQVQLLLEQHPTVLH
HHHHCCCCCCEEEEHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFQLCDENLDERTLAEGALELNLAINPDTEIHWAKHKLQQMCQEAEQVLVHEPNGELRLE
CCCCCCCCCCHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHEEECCCCCHHHH
RLIQLFYVEWGYCGDVNTYFNSENAFIEHVLKEKKGIPVTLGAVFLYLCQYMGFPVSAIN
HHHHHHHHHCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCHHCC
FPTQLVLQIEWPNKKTQYFNPFDGQYLSQHLMTAWLIGYGGPLATIQPSHLEKVDNSTLL
CCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHHHH
GRLLAVIKTACIREKNFSFALKCSDLALTMVPDDPFEIRDRGLIYQQLHCNDAAKNDLEY
HHHHHHHHHHHHHCCCCEEEEEECCEEEEECCCCCHHHHCCCEEEEEECCCCCHHHHHHH
FIEQCPNDPSVLLMKEQVQLLLEQHPTVLH
HHHHCCCCCCEEEEHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]